diff test-data/TEST_4/TEST_4.log @ 0:1a27ad3d0cdf draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:28:43 +0000
parents
children da5f1924bb2e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_4/TEST_4.log	Thu Sep 01 17:28:43 2022 +0000
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+parse genome sequences...
+	imported: 1
+	filtered & revised: 1
+	plasmids: 1
+
+start annotation...
+predict tRNAs...
+	found: 0
+predict tmRNAs...
+	found: 0
+predict rRNAs...
+	found: 0
+predict ncRNAs...
+	found: 0
+predict ncRNA regions...
+	found: 0
+predict CRISPR arrays...
+	found: 0
+predict & annotate CDSs...
+	predicted: 2 
+	discarded spurious: 0
+	revised translational exceptions: 0
+	detected IPSs: 0
+	found PSCs: 0
+	found PSCCs: 0
+	lookup annotations...
+	conduct expert systems...
+		amrfinder: 0
+		protein sequences: 0
+		user protein sequences: 0
+	combine annotations and mark hypotheticals...
+	analyze hypothetical proteins: 2
+	detected Pfam hits: 0 
+	calculated proteins statistics
+	revise special cases...
+extract sORF...
+	potential: 16
+	discarded due to overlaps: 2
+	discarded spurious: 0
+	detected IPSs: 0
+	found PSCs: 0
+	lookup annotations...
+	filter and combine annotations...
+	filtered sORFs: 0
+detect gaps...
+	found: 0
+detect oriCs/oriVs...
+	found: 0
+detect oriTs...
+	found: 0
+apply feature overlap filters...
+select features and create locus tags...
+selected: 2
+
+genome statistics:
+	Genome size: 1,330 bp
+	Contigs/replicons: 1
+	GC: 45.2 %
+	N50: 1,330
+	N ratio: 0.0 %
+	coding density: 62.0 %
+
+annotation summary:
+	tRNAs: 0
+	tmRNAs: 0
+	rRNAs: 0
+	ncRNAs: 0
+	ncRNA regions: 0
+	CRISPR arrays: 0
+	CDSs: 2
+	  hypotheticals: 2
+	  signal peptides: 0
+	sORFs: 0
+	gaps: 0
+	oriCs/oriVs: 0
+	oriTs: 0
+
+export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/12/working
+	human readable TSV...
+	GFF3...
+	INSDC GenBank & EMBL...
+	genome sequences...
+	feature nucleotide sequences...
+	translated CDS sequences...
+	hypothetical TSV...
+	translated hypothetical CDS sequences...
+	machine readable JSON...
+	genome and annotation summary...
+
+If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685
+Annotation successfully finished in 0:01 [mm:ss].