Mercurial > repos > iuc > bakta
diff test-data/amrfinderplus-db/AMR_DNA-Escherichia.tab @ 7:ba6990f72184 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e277883fca66013904bae930f04e7f3be5fcb1a2
| author | iuc |
|---|---|
| date | Wed, 05 Jun 2024 14:22:02 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/amrfinderplus-db/AMR_DNA-Escherichia.tab Wed Jun 05 14:22:02 2024 +0000 @@ -0,0 +1,50 @@ +#accesion_version@gene_name@gene_symbol:start-stop mutation_position mutation_symbol class subclass mutated_gene_name +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 523 16S_A523C AMINOGLYCOSIDE STREPTOMYCIN Escherichia_streptomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 527 16S_G527T AMINOGLYCOSIDE STREPTOMYCIN Escherichia_streptomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 528 16S_C528T AMINOGLYCOSIDE STREPTOMYCIN Escherichia_streptomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 964 16S_A964G TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1053 16S_G1053A TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1054 16S_C1054T TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1055 16S_A1055G TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1058 16S_G1058C TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1064 16S_G1064A AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1064 16S_G1064C AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1064 16S_G1064T AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1066 16S_C1066T AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1068 16S_G1068A AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1192 16S_C1192A AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1192 16S_C1192G AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1192 16S_C1192T AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1406 16S_T1406A AMINOGLYCOSIDE G418/TOBRAMYCIN Escherichia_g418/tobramycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1408 16S_A1408G AMINOGLYCOSIDE GENTAMICIN_C/NEOMYCIN/PAROMOMYCIN Escherichia_gentamicin_c/neomycin/paromomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201 1499 16S_A1499G EDEINE EDEINE Escherichia_edeine_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 794 16S_A794G AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 794 16S_A794T AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 926 16S_G926A AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 926 16S_G926C AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 926 16S_G926T AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 1519 16S_A1519C AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 1519 16S_A1519G AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350 1519 16S_A1519T AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 754 23S_T754A MACROLIDE ERYTHROMYCIN/TELITHROMYCIN Escherichia_erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2032 23S_G2032A LINCOSAMIDE/OXAZOLIDINONE CLINDAMYCIN/LINEZOLID Escherichia_clindamycin/linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2032 23S_G2032C OXAZOLIDINONE LINEZOLID Escherichia_linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2032 23S_G2032T MACROLIDE/OXAZOLIDINONE CLARITHROMYCIN/LINEZOLID Escherichia_clarithromycin/linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2057 23S_G2057A MULTIDRUG CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN Escherichia_chloramphenicol/erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2058 23S_A2058G MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN Escherichia_azithromycin/erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2058 23S_A2058T MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN Escherichia_azithromycin/erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2447 23S_G2447T OXAZOLIDINONE LINEZOLID Escherichia_linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2609 23S_T2609C MACROLIDE TELITHROMYCIN Escherichia_telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA@23S:237160-240064 2611 23S_C2611T MACROLIDE ERYTHROMYCIN/TELITHROMYCIN Escherichia_erythromycin/telithromycin_resistant_23S +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 12 ampC_C-42A BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 12 ampC_C-42G BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 12 ampC_C-42T BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 22 ampC_T-32A BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 22 ampC_T-32C BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 22 ampC_T-32G BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 39 ampC_G-15GG BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 40 ampC_T-14TGT BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489 43 ampC_C-11T BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP095603.1@blaTEM_promoter_region@blaTEM:148777-149952 32 blaTEMp_C32T BETA-LACTAM AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID Escherichia_amoxicillin-clavulanic_acid/piperacillin-tazobactam/ticarcillin-clavulanic_acid_resistant_blaTEM +NZ_CP095603.1@blaTEM_promoter_region@blaTEM:148777-149952 141 blaTEMp_C141G BETA-LACTAM AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID Escherichia_amoxicillin-clavulanic_acid/piperacillin-tazobactam/ticarcillin-clavulanic_acid_resistant_blaTEM +NZ_CP095603.1@blaTEM_promoter_region@blaTEM:148777-149952 162 blaTEMp_G162T BETA-LACTAM AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID Escherichia_amoxicillin-clavulanic_acid/piperacillin-tazobactam/ticarcillin-clavulanic_acid_resistant_blaTEM