view test-data/amrfinderplus-db/AMR_DNA-Escherichia.tab @ 7:ba6990f72184 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e277883fca66013904bae930f04e7f3be5fcb1a2
author iuc
date Wed, 05 Jun 2024 14:22:02 +0000
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#accesion_version@gene_name@gene_symbol:start-stop	mutation_position	mutation_symbol	class	subclass	mutated_gene_name
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	523	16S_A523C	AMINOGLYCOSIDE	STREPTOMYCIN	Escherichia_streptomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	527	16S_G527T	AMINOGLYCOSIDE	STREPTOMYCIN	Escherichia_streptomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	528	16S_C528T	AMINOGLYCOSIDE	STREPTOMYCIN	Escherichia_streptomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	964	16S_A964G	TETRACYCLINE	TETRACYCLINE	Escherichia_tetracycline_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1053	16S_G1053A	TETRACYCLINE	TETRACYCLINE	Escherichia_tetracycline_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1054	16S_C1054T	TETRACYCLINE	TETRACYCLINE	Escherichia_tetracycline_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1055	16S_A1055G	TETRACYCLINE	TETRACYCLINE	Escherichia_tetracycline_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1058	16S_G1058C	TETRACYCLINE	TETRACYCLINE	Escherichia_tetracycline_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1064	16S_G1064A	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1064	16S_G1064C	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1064	16S_G1064T	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1066	16S_C1066T	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1068	16S_G1068A	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1192	16S_C1192A	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1192	16S_C1192G	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1192	16S_C1192T	AMINOGLYCOSIDE	SPECTINOMYCIN	Escherichia_spectinomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1406	16S_T1406A	AMINOGLYCOSIDE	G418/TOBRAMYCIN	Escherichia_g418/tobramycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1408	16S_A1408G	AMINOGLYCOSIDE	GENTAMICIN_C/NEOMYCIN/PAROMOMYCIN	Escherichia_gentamicin_c/neomycin/paromomycin_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsB:4166659-4168201	1499	16S_A1499G	EDEINE	EDEINE	Escherichia_edeine_resistant_16S_rrsB
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	794	16S_A794G	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	794	16S_A794T	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	926	16S_G926A	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	926	16S_G926C	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	926	16S_G926T	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	1519	16S_A1519C	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	1519	16S_A1519G	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_000913.3@16S_ribosomal_RNA@16S_rrsC:3941808-3943350	1519	16S_A1519T	AMINOGLYCOSIDE	KASUGAMYCIN	Escherichia_kasugamycin_resistant_16S_rrsC
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	754	23S_T754A	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	Escherichia_erythromycin/telithromycin_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2032	23S_G2032A	LINCOSAMIDE/OXAZOLIDINONE	CLINDAMYCIN/LINEZOLID	Escherichia_clindamycin/linezolid_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2032	23S_G2032C	OXAZOLIDINONE	LINEZOLID	Escherichia_linezolid_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2032	23S_G2032T	MACROLIDE/OXAZOLIDINONE	CLARITHROMYCIN/LINEZOLID	Escherichia_clarithromycin/linezolid_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2057	23S_G2057A	MULTIDRUG	CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN	Escherichia_chloramphenicol/erythromycin/telithromycin_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2058	23S_A2058G	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	Escherichia_azithromycin/erythromycin/telithromycin_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2058	23S_A2058T	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	Escherichia_azithromycin/erythromycin/telithromycin_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2447	23S_G2447T	OXAZOLIDINONE	LINEZOLID	Escherichia_linezolid_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2609	23S_T2609C	MACROLIDE	TELITHROMYCIN	Escherichia_telithromycin_resistant_23S
NC_004431.1@23S_ribosomal_RNA@23S:237160-240064	2611	23S_C2611T	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	Escherichia_erythromycin/telithromycin_resistant_23S
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	12	ampC_C-42A	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	12	ampC_C-42G	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	12	ampC_C-42T	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	22	ampC_T-32A	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	22	ampC_T-32C	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	22	ampC_T-32G	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	39	ampC_G-15GG	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	40	ampC_T-14TGT	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP041538.1@ampC/blaEC_promoter_region@ampC:1149245-1149489	43	ampC_C-11T	BETA-LACTAM	CEPHALOSPORIN	Escherichia_cephalosporin_resistant_ampC
NZ_CP095603.1@blaTEM_promoter_region@blaTEM:148777-149952	32	blaTEMp_C32T	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	Escherichia_amoxicillin-clavulanic_acid/piperacillin-tazobactam/ticarcillin-clavulanic_acid_resistant_blaTEM
NZ_CP095603.1@blaTEM_promoter_region@blaTEM:148777-149952	141	blaTEMp_C141G	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	Escherichia_amoxicillin-clavulanic_acid/piperacillin-tazobactam/ticarcillin-clavulanic_acid_resistant_blaTEM
NZ_CP095603.1@blaTEM_promoter_region@blaTEM:148777-149952	162	blaTEMp_G162T	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	Escherichia_amoxicillin-clavulanic_acid/piperacillin-tazobactam/ticarcillin-clavulanic_acid_resistant_blaTEM