Mercurial > repos > iuc > bamtools_split_mapped

changeset 4:90af4f8f59af draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 7d29261847d2514a1ac4246e0b8bff1d32463434
author iuc
date Wed, 11 Feb 2026 14:31:28 +0000
parents fa7b5520ae53
children
files bamtools_split_mapped.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/bamtools_split_mapped.xml	Fri Mar 15 13:49:55 2024 +0000
+++ b/bamtools_split_mapped.xml	Wed Feb 11 14:31:28 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="bamtools_split_mapped" name="Split BAM by reads mapping status" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="bamtools_split_mapped" name="Split BAM by reads mapping status" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>into a mapped and an unmapped dataset</description>
     <macros>
           <import>macros.xml</import>
@@ -18,8 +18,8 @@
         <param name="input_bam" type="data" format="bam" label="BAM dataset to split by mapped/unmapped"/>
     </inputs>
     <outputs>
-        <data format="bam" name="mapped" label="${input_bam.name} mapped" from_work_dir="split_bam.MAPPED.bam" />
-        <data format="bam" name="unmapped" label="${input_bam.name} unmapped" from_work_dir="split_bam.UNMAPPED.bam" />
+        <data format="bam" name="mapped" label="${tool.name} on ${on_string}: mapped" from_work_dir="split_bam.MAPPED.bam" />
+        <data format="bam" name="unmapped" label="${tool.name} on ${on_string}: unmapped" from_work_dir="split_bam.UNMAPPED.bam" />
     </outputs>
     <tests>
         <test>
--- a/macros.xml	Fri Mar 15 13:49:55 2024 +0000
+++ b/macros.xml	Wed Feb 11 14:31:28 2026 +0000
@@ -1,7 +1,8 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">2.5.2</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@TOOL_VERSION@">2.5.3</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">24.2</token>
     <xml name="xrefs">
         <xrefs>
             <xref type="bio.tools">bamtools</xref>
@@ -10,7 +11,7 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement>
-            <yield />
+            <requirement type="package" version="1.23">samtools</requirement>
         </requirements>
     </xml>
     <xml name="citations">