Mercurial > repos > iuc > bamtools_split_paired
changeset 2:5325e44297b9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 862f05b5053f55def8007194a702019418697cb5
| author | iuc |
|---|---|
| date | Fri, 13 Jan 2023 12:18:14 +0000 |
| parents | d75061ac28ab |
| children | 75d5afa09972 |
| files | bamtools_split_paired.xml macros.xml test-data/bamtools-split-test1.bam |
| diffstat | 3 files changed, 6 insertions(+), 10 deletions(-) [+] |
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--- a/bamtools_split_paired.xml Wed Jan 11 13:37:37 2023 +0000 +++ b/bamtools_split_paired.xml Fri Jan 13 12:18:14 2023 +0000 @@ -1,5 +1,5 @@ -<tool id="bamtools_split_paired" name="Split BAM by Paired/Single End" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> - <description></description> +<tool id="bamtools_split_paired" name="Split BAM into paired- and single-end" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> + <description>reads datasets</description> <macros> <import>macros.xml</import> </macros> @@ -17,8 +17,8 @@ <param name="input_bam" type="data" format="bam" label="BAM dataset to split by single_end/paired_end"/> </inputs> <outputs> - <data format="bam" name="single" label="${input_bam.name} mapped" from_work_dir="split_bam.SINGLE_END.bam" /> - <data format="bam" name="paired" label="${input_bam.name} unmapped" from_work_dir="split_bam.PAIRED_END.bam" /> + <data format="bam" name="single" label="${input_bam.name} SE reads" from_work_dir="split_bam.SINGLE_END.bam" /> + <data format="bam" name="paired" label="${input_bam.name} PE reads" from_work_dir="split_bam.PAIRED_END.bam" /> </outputs> <tests> <test> @@ -34,13 +34,9 @@ ----- -.. class:: warningmark - - **How it works** - -Splits the input BAM file into 2 output files named (SINGLE_END) and (PAIRED_END) containing single_end and paired_end reads, respectively. +Splits the input BAM file into 2 output files named containing single_end and paired_end reads, respectively. -----
--- a/macros.xml Wed Jan 11 13:37:37 2023 +0000 +++ b/macros.xml Fri Jan 13 12:18:14 2023 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">2.5.2</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement>