Mercurial > repos > iuc > bandage

changeset 3:b2860df42e16 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit ef940ee99e8bf07cfe86b273a3eda72f09003fb3"
author iuc
date Thu, 05 Dec 2019 17:17:29 -0500
parents 58124285e462
children 94fe43e75ddc
files bandage_image.xml bandage_info.xml macros.xml
diffstat 3 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/bandage_image.xml	Fri Jul 05 11:36:09 2019 -0400
+++ b/bandage_image.xml	Thu Dec 05 17:17:29 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="bandage_image" name="Bandage Image" version="@TOOL_VERSION@+galaxy1">
+<tool id="bandage_image" name="Bandage Image" version="@TOOL_VERSION@+galaxy2" profile="18.01">
     <description>visualize de novo assembly graphs</description>
     <macros>
         <import>macros.xml</import>
@@ -6,9 +6,7 @@
     <expand macro="requirements"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"> <![CDATA[
-## set headless mode
-export QT_QPA_PLATFORM='offscreen' &&
-
+@HEADLESS@
 Bandage
     image
     '$input_file'
--- a/bandage_info.xml	Fri Jul 05 11:36:09 2019 -0400
+++ b/bandage_info.xml	Thu Dec 05 17:17:29 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="bandage_info" name="Bandage Info" version="@TOOL_VERSION@+galaxy0">
+<tool id="bandage_info" name="Bandage Info" version="@TOOL_VERSION@+galaxy1" profile="18.01">
     <description>determine statistics of de novo assembly graphs</description>
     <macros>
         <import>macros.xml</import>
@@ -7,6 +7,7 @@
     <expand macro="version_command"/>
     <command detect_errors="exit_code">
     <![CDATA[
+@HEADLESS@
 Bandage
     info
     '$input_file'
--- a/macros.xml	Fri Jul 05 11:36:09 2019 -0400
+++ b/macros.xml	Thu Dec 05 17:17:29 2019 -0500
@@ -6,8 +6,10 @@
         </requirements>
     </xml>
     <xml name="version_command">
-        <version_command>Bandage --version</version_command>
+        <version_command>@HEADLESS@ Bandage --version</version_command>
     </xml>
+    <token name="@HEADLESS@"><![CDATA[export QT_QPA_PLATFORM='offscreen' &&]]>
+</token>
     <token name="@BANDAGE_OVERVIEW@">
 
 **Bandage Overview**