Mercurial > repos > iuc > bbtools_bbmap

annotate test-data/cv_output.gff @ 13:456d8ebb6a28 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
author iuc
date Tue, 27 Aug 2024 10:15:02 +0000
parents 17ad142b56e6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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13
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
1 ##gff-version 3
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
2 #BBMapVersion 39.08
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17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
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diff changeset
3 #ploidy 2
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
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4 #rarity 1.00000
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
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diff changeset
5 #minAlleleFraction 0.1000
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
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6 #reads 2207
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
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7 #pairedReads 0
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
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8 #properlyPairedReads 0
13
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
9 #readLengthAvg 145.46
1
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
10 #properPairRate 0.0000
13
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
11 #totalQualityAvg 36.5800
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
12 #mapqAvg 43.35
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
13 #reference /home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
1
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
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diff changeset
14 #seqid source type start end score strand phase attributes
13
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
15 NC_002945.4 . sequence_variant_obs 976327 976327 0.87 + . ID=SUB T
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
16 NC_002945.4 . sequence_variant_obs 1501932 1501932 0.92 + . ID=SUB C
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
17 NC_002945.4 . sequence_variant_obs 3380579 3380579 0.92 + . ID=SUB G
456d8ebb6a28 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 1
diff changeset
18 NC_002945.4 . sequence_variant_obs 3646293 3646293 0.89 + . ID=SUB A