Mercurial > repos > iuc > bbtools_bbmap
changeset 5:81cbb6a4c1ca draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 08ae36bc77634de84d9613a71552a3e64a71a3f7"
| author | iuc |
|---|---|
| date | Thu, 17 Mar 2022 07:44:30 +0000 |
| parents | 6d44c9f1a42b |
| children | 858a65b52cf9 |
| files | bbmap.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/bbmap.xml Thu Feb 03 21:13:25 2022 +0000 +++ b/bbmap.xml Thu Mar 17 07:44:30 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="bbtools_bbmap" name="BBTools: BBMap" version="@WRAPPER_VERSION@+galaxy3" profile="@PROFILE@"> +<tool id="bbtools_bbmap" name="BBTools: BBMap" version="@WRAPPER_VERSION@+galaxy4" profile="@PROFILE@"> <description>short-read aligner</description> <macros> <import>macros.xml</import> @@ -30,7 +30,7 @@ #end if #else: #set read1 = $input_type_cond.reads_collection['forward'] - #set read1_identifier = re.sub('[^\s\w\-]', '_', str($read1.name)) + #set read1_identifier = re.sub('[^\s\w\-]', '_', str($read1.element_identifier)) ## bbmap uses the file extension to determine the input format. #set ext = $read1_identifier + '.fastq' #if $read1.ext.endswith('.gz'): @@ -39,7 +39,7 @@ #set read1_file = $read1_identifier + $ext ln -s '${read1}' '${read1_file}' && #set read2 = $input_type_cond.reads_collection['reverse'] - #set read2_identifier = re.sub('[^\s\w\-]', '_', str($read2.name)) + #set read2_identifier = re.sub('[^\s\w\-]', '_', str($read2.element_identifier)) #set read2_file = $read2_identifier + $ext ln -s '${read2}' '${read2_file}' && #end if