Mercurial > repos > iuc > bcftools_plugin_missing2ref

comparison test-data/consensus.vcf @ 0:5e9cf5308e97 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:07:16 -0400
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-1:000000000000 0:5e9cf5308e97
1 ##fileformat=VCFv4.2
2 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
3 ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
4 ##ALT=<ID=DEL,Description="Deletion">
5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA001
6 1 5 . C a . PASS . GT 0/1
7 1 5 . C t . PASS . GT 0/1
8 1 7 . T a . PASS . GT .
9 1 10 . G a . PASS . GT 0/1
10 1 12 . GACA ga . PASS . GT 0/1
11 1 16 . T taaa . PASS . GT 1/1
12 1 19 . A c . PASS . GT 0/1
13 1 61 . C a . PASS . GT 0/1
14 2 61 . AGAG aa . PASS . GT 0/1
15 2 119 . AAA t . PASS . GT 0/1
16 2 179 . G gacgtacgt . PASS . GT 0/1
17 2 200 . A <DEL> . PASS END=210 GT 1/0
18 2 481 . T c,a . PASS . GT 0/2