Mercurial > repos > iuc > bcftools_plugin_missing2ref
diff test-data/consensus.vcf @ 0:5e9cf5308e97 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
| author | iuc |
|---|---|
| date | Wed, 06 Jul 2016 07:07:16 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/consensus.vcf Wed Jul 06 07:07:16 2016 -0400 @@ -0,0 +1,18 @@ +##fileformat=VCFv4.2 +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record"> +##ALT=<ID=DEL,Description="Deletion"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA001 +1 5 . C a . PASS . GT 0/1 +1 5 . C t . PASS . GT 0/1 +1 7 . T a . PASS . GT . +1 10 . G a . PASS . GT 0/1 +1 12 . GACA ga . PASS . GT 0/1 +1 16 . T taaa . PASS . GT 1/1 +1 19 . A c . PASS . GT 0/1 +1 61 . C a . PASS . GT 0/1 +2 61 . AGAG aa . PASS . GT 0/1 +2 119 . AAA t . PASS . GT 0/1 +2 179 . G gacgtacgt . PASS . GT 0/1 +2 200 . A <DEL> . PASS END=210 GT 1/0 +2 481 . T c,a . PASS . GT 0/2