Mercurial > repos > iuc > bcftools_plugin_split_vep

annotate test-data/annotate2.vcf @ 0:3b6cd8086498 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
author iuc
date Sat, 23 Jul 2022 13:49:21 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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1 ##fileformat=VCFv4.1
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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2 ##contig=<ID=1,assembly=b37,length=249250621>
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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3 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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4 ##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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5 ##INFO=<ID=IINT,Number=1,Type=Integer,Description="Test type">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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6 ##INFO=<ID=IFLT,Number=1,Type=Float,Description="Test type">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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7 ##INFO=<ID=ISTR,Number=1,Type=String,Description="Test type">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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9 ##FORMAT=<ID=FINT,Number=1,Type=Integer,Description="Test type">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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10 ##FORMAT=<ID=FFLT,Number=1,Type=Float,Description="Test type">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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11 ##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test type">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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12 ##FILTER=<ID=q11,Description="Quality below 10">
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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13 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B C
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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14 1 3000001 xx C T 11 PASS FLAG;IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR 0/0:11:1.1:xxx 0/0:11:1.1:x 0/0:11:1.1:x
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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15 1 3000002 . C T . . . GT . . .
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
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16 1 3000003 xx C T 11 q11 FLAG;IINT=.;IFLT=.;ISTR=. GT:FINT:FFLT:FSTR 0/0:.:.:. 0/0:.:.:. 0/0:.:.:.
3b6cd8086498 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit c45135e52ae5039e09272ac6f504d0ceb574aa70
iuc
parents:
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17 1 3000004 xx C T 11 q11 FLAG;IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR 0/0:11:1.1:x 0/0:11:1.1:xxx 0/0:11:1.1:xxx