Mercurial > repos > iuc > bcftools_roh
changeset 2:6ed9d03452ad draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6
| author | iuc |
|---|---|
| date | Mon, 03 Oct 2016 12:18:11 -0400 |
| parents | 40d8186eb3bb |
| children | 809a20f5dcb8 |
| files | bcftools_roh.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/bcftools_roh.xml Wed Jul 13 11:00:47 2016 -0400 +++ b/bcftools_roh.xml Mon Oct 03 12:18:11 2016 -0400 @@ -1,5 +1,5 @@ <?xml version='1.0' encoding='utf-8'?> -<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0"> +<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1"> <description>HMM model for detecting runs of autozygosity</description> <macros> <token name="@EXECUTABLE@">roh</token> @@ -79,8 +79,8 @@ <param name="rec_rate" type="float" label="Rec Rate" optional="True" help="Constant recombination rate per bp" /> </section> <section name="sec_hmm" expanded="true" title="HMM Options"> - <param name="hw_to_az" type="float" label="Hw To Az" default="6.7e-8" optional="True" help="P(AZ|HW) transition probability from HW (Hardy-Weinberg) to AZ (autozygous) state" /> - <param name="az_to_hw" type="float" label="Az To Hw" default="5e-9" optional="True" help="P(HW|AZ) transition probability from AZ to HW state" /> + <param name="hw_to_az" type="float" label="Hw To Az" value="6.7e-8" optional="True" help="P(AZ|HW) transition probability from HW (Hardy-Weinberg) to AZ (autozygous) state" /> + <param name="az_to_hw" type="float" label="Az To Hw" value="5e-9" optional="True" help="P(HW|AZ) transition probability from AZ to HW state" /> <param name="viterbi_training" type="boolean" truevalue="--viterbi-training" falsevalue="" label="Viterbi Training" help="Perform Viterbi training to estimate transition probabilities" /> </section> </inputs>