Mercurial > repos > iuc > bctools_convert_to_binary_barcode
diff convert_bc_to_binary_RY.xml @ 0:595a5acb6a17 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
author | iuc |
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date | Tue, 14 Nov 2017 05:52:44 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convert_bc_to_binary_RY.xml Tue Nov 14 05:52:44 2017 -0500 @@ -0,0 +1,44 @@ +<tool id="bctools_convert_to_binary_barcode" name="Create binary barcodes" version="@VERSION@"> + <description>from regular barcodes.</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="exit_code"><![CDATA[ + convert_bc_to_binary_RY.py + '$barcodes' + > '$barcodes_ry' + ]]></command> + <inputs> + <param name="barcodes" type="data" format="fastq" label="FASTQ file to convert"/> + </inputs> + <outputs> + <data name="barcodes_ry" format="fastq"/> + </outputs> + <tests> + <test> + <param name="barcodes" value="extracted_bcs.fastq"/> + <output name="barcodes_ry" file="converted_bcs.fastq"/> + </test> + </tests> + <help><![CDATA[ + +bctools - Create binary barcodes from regular barcodes +====================================================== + +This tool converts standard nucleotide codes to the IUPAC nucleotide codes used for binary barcodes. +A and G are converted to nucleotide code R. T, U and C are converted to Y. + +Input +----- + +The input for this tool is a FASTQ file. + +Output +------ + +This tool produces a single FASTQ file containing the converted barcodes. + + ]]></help> + <expand macro="citations"/> +</tool>