Mercurial > repos > iuc > bctools_convert_to_binary_barcode

annotate convert_bc_to_binary_RY.xml @ 0:595a5acb6a17 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
author iuc
date Tue, 14 Nov 2017 05:52:44 -0500
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595a5acb6a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
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1 <tool id="bctools_convert_to_binary_barcode" name="Create binary barcodes" version="@VERSION@">
595a5acb6a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
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2 <description>from regular barcodes.</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements"/>
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7 <command detect_errors="exit_code"><![CDATA[
595a5acb6a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
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8 convert_bc_to_binary_RY.py
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9 '$barcodes'
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10 > '$barcodes_ry'
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11 ]]></command>
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12 <inputs>
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13 <param name="barcodes" type="data" format="fastq" label="FASTQ file to convert"/>
595a5acb6a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
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14 </inputs>
595a5acb6a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
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15 <outputs>
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16 <data name="barcodes_ry" format="fastq"/>
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17 </outputs>
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18 <tests>
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19 <test>
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20 <param name="barcodes" value="extracted_bcs.fastq"/>
595a5acb6a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
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21 <output name="barcodes_ry" file="converted_bcs.fastq"/>
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22 </test>
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23 </tests>
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24 <help><![CDATA[
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25
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26 bctools - Create binary barcodes from regular barcodes
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27 ======================================================
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29 This tool converts standard nucleotide codes to the IUPAC nucleotide codes used for binary barcodes.
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30 A and G are converted to nucleotide code R. T, U and C are converted to Y.
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32 Input
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33 -----
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35 The input for this tool is a FASTQ file.
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37 Output
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38 ------
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40 This tool produces a single FASTQ file containing the converted barcodes.
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42 ]]></help>
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43 <expand macro="citations"/>
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44 </tool>