Mercurial > repos > iuc > beacon2_datasets

annotate macros.xml @ 0:a38d4a52dbff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
author iuc
date Mon, 22 Jul 2024 12:36:52 +0000
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children 1f9f549aa9ca
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a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
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1 <macros>
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2 <token name="@VERSION_SUFFIX@">0</token>
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3 <token name="@TOOL_VERSION@">2.2.1</token>
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iuc
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4 <xml name="requirements">
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5 <requirements>
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6 <requirement type="package" version="@TOOL_VERSION@">beacon2-import</requirement>
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7 </requirements>
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8 </xml>
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9 <xml name="xrefs">
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10 <xrefs>
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11 <xref type="bio.tools">ga4gh_beacon</xref>
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12 </xrefs>
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
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13 </xml>
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
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14 <xml name="creators">
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15 <creator>
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16 <person givenName="Khaled" familyName="Jum'ah" url="https://github.com/khaled196" />
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17 <person givenName="Björn" familyName="Grüning" url="https://github.com/bgruening" />
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18 <person givenName="Katarzyna" familyName="Kamieniecka" url="https://github.com/kkamieniecka" />
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
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19 <person givenName="Krzysztof" familyName="Poterlowicz" url="https://github.com/poterlowicz-lab" />
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20 <organization name="poterlowicz-lab" url="https://github.com/poterlowicz-lab" />
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
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21 </creator>
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22 </xml>
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23 <xml name="Connection_to_MongoDB">
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24 <param argument="--db-host" type="text" label="DATABASE HOST" value="127.0.0.1" help="Hostname/IP of the beacon database" />
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25 <param argument="--db-port" type="integer" label="DATABASE PORT" value="27017" help="Port of the beacon database" />
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26 </xml>
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27 <xml name="Database_Configuration">
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28 <param argument="--database" type="text" label="DATABASE" value="" help="The targeted beacon database" />
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29 <param argument="--collection" type="text" label="COLLECTION" value="" help="The targeted beacon collection from the desired database" />
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30 </xml>
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31 <xml name="citations">
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32 <citations>
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33 <citation type="doi">10.1002/humu.24369</citation>
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34 </citations>
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35 </xml>
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36 <xml name="configfile">
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37 <configfiles>
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38 <configfile name="credentials"><![CDATA[
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
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39 #set $db_auth_source = $__user__.extra_preferences.get('beacon2_account|db_auth_source', "")
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40 #set $db_user = $__user__.extra_preferences.get('beacon2_account|db_user', "")
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41 #set $db_password = $__user__.extra_preferences.get('beacon2_account|db_password', "")
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42 #if $db_user == "" or $db_password == "" or $db_auth_source == "":
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43 #set $db_auth_source = "admin"
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44 #set $db_user = "root"
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45 #set $db_password = "example"
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46 #end if
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47 {
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48 "db_auth_source": "$db_auth_source",
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49 "db_user": "$db_user",
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50 "db_password": "$db_password"
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51 }
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52 ]]></configfile>
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53 </configfiles>
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54 </xml>
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55 </macros>