Mercurial > repos > iuc > beacon2_datasets

comparison macros.xml @ 0:a38d4a52dbff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
author iuc
date Mon, 22 Jul 2024 12:36:52 +0000
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children 1f9f549aa9ca
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-1:000000000000 0:a38d4a52dbff
1 <macros>
2 <token name="@VERSION_SUFFIX@">0</token>
3 <token name="@TOOL_VERSION@">2.2.1</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">beacon2-import</requirement>
7 </requirements>
8 </xml>
9 <xml name="xrefs">
10 <xrefs>
11 <xref type="bio.tools">ga4gh_beacon</xref>
12 </xrefs>
13 </xml>
14 <xml name="creators">
15 <creator>
16 <person givenName="Khaled" familyName="Jum'ah" url="https://github.com/khaled196" />
17 <person givenName="Björn" familyName="Grüning" url="https://github.com/bgruening" />
18 <person givenName="Katarzyna" familyName="Kamieniecka" url="https://github.com/kkamieniecka" />
19 <person givenName="Krzysztof" familyName="Poterlowicz" url="https://github.com/poterlowicz-lab" />
20 <organization name="poterlowicz-lab" url="https://github.com/poterlowicz-lab" />
21 </creator>
22 </xml>
23 <xml name="Connection_to_MongoDB">
24 <param argument="--db-host" type="text" label="DATABASE HOST" value="127.0.0.1" help="Hostname/IP of the beacon database" />
25 <param argument="--db-port" type="integer" label="DATABASE PORT" value="27017" help="Port of the beacon database" />
26 </xml>
27 <xml name="Database_Configuration">
28 <param argument="--database" type="text" label="DATABASE" value="" help="The targeted beacon database" />
29 <param argument="--collection" type="text" label="COLLECTION" value="" help="The targeted beacon collection from the desired database" />
30 </xml>
31 <xml name="citations">
32 <citations>
33 <citation type="doi">10.1002/humu.24369</citation>
34 </citations>
35 </xml>
36 <xml name="configfile">
37 <configfiles>
38 <configfile name="credentials"><![CDATA[
39 #set $db_auth_source = $__user__.extra_preferences.get('beacon2_account|db_auth_source', "")
40 #set $db_user = $__user__.extra_preferences.get('beacon2_account|db_user', "")
41 #set $db_password = $__user__.extra_preferences.get('beacon2_account|db_password', "")
42 #if $db_user == "" or $db_password == "" or $db_auth_source == "":
43 #set $db_auth_source = "admin"
44 #set $db_user = "root"
45 #set $db_password = "example"
46 #end if
47 {
48 "db_auth_source": "$db_auth_source",
49 "db_user": "$db_user",
50 "db_password": "$db_password"
51 }
52 ]]></configfile>
53 </configfiles>
54 </xml>
55 </macros>