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view test-data/biosamples_query_findings.json @ 0:a38d4a52dbff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
author iuc
date Mon, 22 Jul 2024 12:36:52 +0000
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{'_id': ObjectId('668fb4eb8ed056280039f1bd'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb4eb8ed056280039f1bd',
 'individualId': 'NA24631',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb4eb8ed056280039f1be'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb4eb8ed056280039f1be',
 'individualId': 'NA24694',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb4eb8ed056280039f1bf'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb4eb8ed056280039f1bf',
 'individualId': 'NA24695',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb7125d00a890d911aa69'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb7125d00a890d911aa69',
 'individualId': 'NA24631',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb7125d00a890d911aa6a'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb7125d00a890d911aa6a',
 'individualId': 'NA24694',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb7125d00a890d911aa6b'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb7125d00a890d911aa6b',
 'individualId': 'NA24695',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb721ae6c452887afb69d'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb721ae6c452887afb69d',
 'individualId': 'NA24631',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb721ae6c452887afb69e'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb721ae6c452887afb69e',
 'individualId': 'NA24694',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}
{'_id': ObjectId('668fb721ae6c452887afb69f'),
 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
 'collectionDate': '2021-04-23',
 'collectionMoment': 'P32Y6M1D',
 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
 'histologicalDiagnosis': {'id': 'NCIT:C39853',
                           'label': 'Infiltrating Urothelial Carcinoma'},
 'id': 'refvar-668fb721ae6c452887afb69f',
 'individualId': 'NA24695',
 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
                             'label': 'T2b Stage Finding'}],
 'sampleOriginDetail': {'id': 'UBERON:0001256',
                        'label': 'wall of urinary bladde'},
 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
 'tumorProgression': {'id': 'NCIT:C84509',
                      'label': 'Primary Malignant Neoplasm'}}