Mercurial > repos > iuc > beacon2_datasets

annotate test-data/biosamples_query_findings.json @ 0:a38d4a52dbff draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
author iuc
date Mon, 22 Jul 2024 12:36:52 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
1 {'_id': ObjectId('668fb4eb8ed056280039f1bd'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
2 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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3 'collectionDate': '2021-04-23',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
4 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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5 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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6 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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7 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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8 'id': 'refvar-668fb4eb8ed056280039f1bd',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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9 'individualId': 'NA24631',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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10 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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11 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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12 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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13 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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14 'label': 'wall of urinary bladde'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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15 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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16 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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17 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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18 'label': 'Primary Malignant Neoplasm'}}
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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19 {'_id': ObjectId('668fb4eb8ed056280039f1be'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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20 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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21 'collectionDate': '2021-04-23',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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22 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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23 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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24 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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25 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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26 'id': 'refvar-668fb4eb8ed056280039f1be',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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27 'individualId': 'NA24694',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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28 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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29 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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30 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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31 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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32 'label': 'wall of urinary bladde'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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33 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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34 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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35 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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36 'label': 'Primary Malignant Neoplasm'}}
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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37 {'_id': ObjectId('668fb4eb8ed056280039f1bf'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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38 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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39 'collectionDate': '2021-04-23',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
40 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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41 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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42 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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43 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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44 'id': 'refvar-668fb4eb8ed056280039f1bf',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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45 'individualId': 'NA24695',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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46 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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47 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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48 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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49 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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50 'label': 'wall of urinary bladde'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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51 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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52 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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53 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
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54 'label': 'Primary Malignant Neoplasm'}}
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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55 {'_id': ObjectId('668fb7125d00a890d911aa69'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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56 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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57 'collectionDate': '2021-04-23',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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58 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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59 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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60 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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61 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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62 'id': 'refvar-668fb7125d00a890d911aa69',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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63 'individualId': 'NA24631',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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64 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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65 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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66 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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67 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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68 'label': 'wall of urinary bladde'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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69 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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70 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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71 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
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72 'label': 'Primary Malignant Neoplasm'}}
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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73 {'_id': ObjectId('668fb7125d00a890d911aa6a'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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74 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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75 'collectionDate': '2021-04-23',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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76 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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77 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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78 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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79 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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80 'id': 'refvar-668fb7125d00a890d911aa6a',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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81 'individualId': 'NA24694',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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82 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
83 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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84 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
85 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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86 'label': 'wall of urinary bladde'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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87 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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88 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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89 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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90 'label': 'Primary Malignant Neoplasm'}}
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
91 {'_id': ObjectId('668fb7125d00a890d911aa6b'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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92 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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93 'collectionDate': '2021-04-23',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
94 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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95 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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96 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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97 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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98 'id': 'refvar-668fb7125d00a890d911aa6b',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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99 'individualId': 'NA24695',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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100 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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101 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
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iuc
parents:
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102 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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103 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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104 'label': 'wall of urinary bladde'},
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iuc
parents:
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105 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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106 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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107 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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108 'label': 'Primary Malignant Neoplasm'}}
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iuc
parents:
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109 {'_id': ObjectId('668fb721ae6c452887afb69d'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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110 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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111 'collectionDate': '2021-04-23',
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iuc
parents:
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112 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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113 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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114 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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115 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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116 'id': 'refvar-668fb721ae6c452887afb69d',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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117 'individualId': 'NA24631',
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iuc
parents:
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118 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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119 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
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iuc
parents:
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120 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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121 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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122 'label': 'wall of urinary bladde'},
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iuc
parents:
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123 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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124 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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125 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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126 'label': 'Primary Malignant Neoplasm'}}
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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127 {'_id': ObjectId('668fb721ae6c452887afb69e'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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128 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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129 'collectionDate': '2021-04-23',
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iuc
parents:
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130 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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131 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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132 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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133 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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134 'id': 'refvar-668fb721ae6c452887afb69e',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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135 'individualId': 'NA24694',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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136 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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137 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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138 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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139 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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140 'label': 'wall of urinary bladde'},
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iuc
parents:
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141 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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142 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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143 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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144 'label': 'Primary Malignant Neoplasm'}}
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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145 {'_id': ObjectId('668fb721ae6c452887afb69f'),
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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146 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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147 'collectionDate': '2021-04-23',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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148 'collectionMoment': 'P32Y6M1D',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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149 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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150 'histologicalDiagnosis': {'id': 'NCIT:C39853',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
151 'label': 'Infiltrating Urothelial Carcinoma'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
152 'id': 'refvar-668fb721ae6c452887afb69f',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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153 'individualId': 'NA24695',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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154 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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155 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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156 'label': 'T2b Stage Finding'}],
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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157 'sampleOriginDetail': {'id': 'UBERON:0001256',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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158 'label': 'wall of urinary bladde'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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159 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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160 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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161 'tumorProgression': {'id': 'NCIT:C84509',
a38d4a52dbff planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
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162 'label': 'Primary Malignant Neoplasm'}}