Mercurial > repos > iuc > beacon2_individuals

annotate test-data/biosamples_query_findings.json @ 0:b648eb72552c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
author iuc
date Mon, 22 Jul 2024 12:35:16 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
1 {'_id': ObjectId('668fb4eb8ed056280039f1bd'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
2 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
3 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
4 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
5 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
6 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
7 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
8 'id': 'refvar-668fb4eb8ed056280039f1bd',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
9 'individualId': 'NA24631',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
10 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
11 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
12 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
13 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
14 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
15 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
16 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
17 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
18 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
19 {'_id': ObjectId('668fb4eb8ed056280039f1be'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
20 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
21 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
22 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
23 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
24 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
25 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
26 'id': 'refvar-668fb4eb8ed056280039f1be',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
27 'individualId': 'NA24694',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
28 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
29 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
30 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
31 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
32 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
33 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
34 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
35 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
36 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
37 {'_id': ObjectId('668fb4eb8ed056280039f1bf'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
38 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
39 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
40 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
41 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
42 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
43 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
44 'id': 'refvar-668fb4eb8ed056280039f1bf',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
45 'individualId': 'NA24695',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
46 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
47 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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48 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
49 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
50 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
51 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
52 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
53 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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54 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
55 {'_id': ObjectId('668fb7125d00a890d911aa69'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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56 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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57 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
58 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
59 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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60 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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61 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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62 'id': 'refvar-668fb7125d00a890d911aa69',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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63 'individualId': 'NA24631',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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64 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
65 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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66 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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67 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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68 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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69 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
70 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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71 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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72 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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73 {'_id': ObjectId('668fb7125d00a890d911aa6a'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
74 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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75 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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76 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
77 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
78 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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79 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
80 'id': 'refvar-668fb7125d00a890d911aa6a',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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81 'individualId': 'NA24694',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
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82 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
83 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
84 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
85 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
86 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
87 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
88 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
89 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
90 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
91 {'_id': ObjectId('668fb7125d00a890d911aa6b'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
92 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
93 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
94 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
95 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
96 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
97 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
98 'id': 'refvar-668fb7125d00a890d911aa6b',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
99 'individualId': 'NA24695',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
100 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
101 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
102 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
103 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
104 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
105 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
106 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
107 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
108 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
109 {'_id': ObjectId('668fb721ae6c452887afb69d'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
110 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
111 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
112 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
113 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
114 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
115 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
116 'id': 'refvar-668fb721ae6c452887afb69d',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
117 'individualId': 'NA24631',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
118 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
119 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
120 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
121 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
122 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
123 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
124 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
125 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
126 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
127 {'_id': ObjectId('668fb721ae6c452887afb69e'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
128 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
129 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
130 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
131 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
132 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
133 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
134 'id': 'refvar-668fb721ae6c452887afb69e',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
135 'individualId': 'NA24694',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
136 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
137 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
138 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
139 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
140 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
141 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
142 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
143 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
144 'label': 'Primary Malignant Neoplasm'}}
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
145 {'_id': ObjectId('668fb721ae6c452887afb69f'),
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
146 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
147 'collectionDate': '2021-04-23',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
148 'collectionMoment': 'P32Y6M1D',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
149 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
150 'histologicalDiagnosis': {'id': 'NCIT:C39853',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
151 'label': 'Infiltrating Urothelial Carcinoma'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
152 'id': 'refvar-668fb721ae6c452887afb69f',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
153 'individualId': 'NA24695',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
154 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
155 'pathologicalTnmFinding': [{'id': 'NCIT:C48726',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
156 'label': 'T2b Stage Finding'}],
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
157 'sampleOriginDetail': {'id': 'UBERON:0001256',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
158 'label': 'wall of urinary bladde'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
159 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
160 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'},
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
161 'tumorProgression': {'id': 'NCIT:C84509',
b648eb72552c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
iuc
parents:
diff changeset
162 'label': 'Primary Malignant Neoplasm'}}