Mercurial > repos > iuc > bedtools
annotate expandBed.xml @ 4:607c0576c6ab draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
| author | iuc |
|---|---|
| date | Wed, 27 Jan 2016 15:15:59 -0500 |
| parents | 82aac94b06c3 |
| children | 95a3b2c25bd1 |
| rev | line source |
|---|---|
| 0 | 1 <tool id="bedtools_expandbed" name="ExpandBed" version="@WRAPPER_VERSION@.0"> |
|
4
607c0576c6ab
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
iuc
parents:
1
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changeset
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2 <description>replicate lines based on lists of values in columns</description> |
| 0 | 3 <macros> |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <expand macro="stdio" /> | |
| 8 <command> | |
| 1 | 9 <![CDATA[ |
| 0 | 10 bedtools expand |
| 1 | 11 -c "${cols}" |
| 12 -i "${input}" | |
| 13 > "${output}" | |
| 14 ]]> | |
| 0 | 15 </command> |
| 16 <inputs> | |
| 1 | 17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/> |
| 18 <expand macro="choose_columns" /> | |
| 0 | 19 </inputs> |
| 20 <outputs> | |
| 1 | 21 <data name="output" metadata_source="input" format_source="input" /> |
| 0 | 22 </outputs> |
| 1 | 23 <tests> |
| 24 <test> | |
| 25 <param name="input" value="expandBed1.bed" ftype="bed" /> | |
| 26 <param name="cols" value="5"/> | |
| 27 <output name="output" file="expandBed_result1.bed" ftype="bed" /> | |
| 28 </test> | |
| 29 <test> | |
| 30 <param name="input" value="expandBed1.bed" ftype="bed" /> | |
| 31 <param name="cols" value="4,5"/> | |
| 32 <output name="output" file="expandBed_result2.bed" ftype="bed" /> | |
| 33 </test> | |
| 34 </tests> | |
| 0 | 35 <help> |
| 1 | 36 <![CDATA[ |
| 0 | 37 **What it does** |
| 38 | |
| 39 Replicate lines in a file based on columns of comma-separated values. | |
| 40 | |
| 41 @REFERENCES@ | |
| 1 | 42 ]]> |
| 0 | 43 </help> |
| 44 <expand macro="citations" /> | |
| 45 </tool> |