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comparison randomBed.xml @ 2:457b09031d57 draft

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Uploaded
author iuc
date Tue, 19 May 2015 07:05:36 -0400
parents 82aac94b06c3
children 607c0576c6ab
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1:82aac94b06c3 2:457b09031d57
9 <![CDATA[ 9 <![CDATA[
10 bedtools random 10 bedtools random
11 -g $genome 11 -g $genome
12 -l $length 12 -l $length
13 -n $intervals 13 -n $intervals
14 #if $seed.seed_choose: 14 #if str($seed.seed_choose) == "True":
15 -seed $seed.seed 15 -seed $seed.seed
16 #end if 16 #end if
17 > "$output" 17 > "$output"
18 ]]> 18 ]]>
19 </command> 19 </command>
27 <data format="bed" name="output" /> 27 <data format="bed" name="output" />
28 </outputs> 28 </outputs>
29 <tests> 29 <tests>
30 <test> 30 <test>
31 <param name="genome" value="mm9_chr1.len" /> 31 <param name="genome" value="mm9_chr1.len" />
32 <param name="seed_choose" value="True" /> 32 <param name="seed_choose" value="False" />
33 <param name="seed" value="1" />
34 <param name="length" value="5" /> 33 <param name="length" value="5" />
35 <param name="intervals" value="3" /> 34 <param name="intervals" value="3" />
36 <output name="output" file="randomBed_result1.bed" ftype="bed" /> 35 <output name="output">
36 <assert_contents>
37 <has_text_matching expression="chr1" />
38 <has_n_columns n="6" />
39 </assert_contents>
40 </output>
37 </test> 41 </test>
38 </tests> 42 </tests>
39 <help> 43 <help>
40 <![CDATA[ 44 <![CDATA[
41 **What it does** 45 **What it does**