Mercurial > repos > iuc > bedtools
comparison randomBed.xml @ 0:b8348686a0b9 draft
Imported from capsule None
| author | iuc |
|---|---|
| date | Tue, 04 Nov 2014 01:45:04 -0500 |
| parents | |
| children | 82aac94b06c3 |
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| -1:000000000000 | 0:b8348686a0b9 |
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| 1 <tool id="bedtools_randombed" name="RandomBed" version="@WRAPPER_VERSION@.0"> | |
| 2 <description></description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <expand macro="stdio" /> | |
| 8 <command> | |
| 9 bedtools random | |
| 10 -g $genome | |
| 11 -l $length | |
| 12 -n $intervals | |
| 13 #if $seed.choose: | |
| 14 -seed $seed.seed | |
| 15 #end if | |
| 16 </command> | |
| 17 <inputs> | |
| 18 <expand macro="genome" /> | |
| 19 <param name="length" type="integer" value="100" label="The length of the intervals to generate." /> | |
| 20 <param name="intervals" type="integer" value="1000000" label="The number of intervals to generate." /> | |
| 21 <expand macro="seed" /> | |
| 22 </inputs> | |
| 23 <outputs> | |
| 24 <data format="bed" name="output" /> | |
| 25 </outputs> | |
| 26 <help> | |
| 27 | |
| 28 **What it does** | |
| 29 | |
| 30 bedtools random will generate a random set of intervals in BED6 format. One can specify both the number (-n) and the size (-l) of the intervals that should be generated. | |
| 31 | |
| 32 @REFERENCES@ | |
| 33 </help> | |
| 34 <expand macro="citations" /> | |
| 35 </tool> |