Mercurial > repos > iuc > biapy
comparison test-data/example.yaml @ 0:e434d9b9cd13 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/biapy/ commit 66b393a7118c81d86d0fd80780d2bd551c18f3f0
| author | iuc |
|---|---|
| date | Thu, 09 Oct 2025 07:42:36 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:e434d9b9cd13 |
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| 1 # BiaPy version: 3.6.2 | |
| 2 | |
| 3 SYSTEM: | |
| 4 NUM_CPUS: -1 | |
| 5 | |
| 6 PROBLEM: | |
| 7 TYPE: SEMANTIC_SEG | |
| 8 NDIM: 2D | |
| 9 | |
| 10 DATA: | |
| 11 PATCH_SIZE: (256, 256, 1) | |
| 12 TRAIN: | |
| 13 PATH: /path/to/data | |
| 14 GT_PATH: /path/to/data | |
| 15 IN_MEMORY: True | |
| 16 VAL: | |
| 17 SPLIT_TRAIN: 0.1 | |
| 18 TEST: | |
| 19 PATH: /path/to/data | |
| 20 GT_PATH: /path/to/data | |
| 21 IN_MEMORY: True | |
| 22 LOAD_GT: True | |
| 23 PADDING: (32,32) | |
| 24 | |
| 25 AUGMENTOR: | |
| 26 ENABLE: True | |
| 27 AUG_SAMPLES: False | |
| 28 RANDOM_ROT: True | |
| 29 VFLIP: True | |
| 30 HFLIP: True | |
| 31 | |
| 32 MODEL: | |
| 33 ARCHITECTURE: unet | |
| 34 FEATURE_MAPS: [16, 32, 64, 128, 256] | |
| 35 LOAD_CHECKPOINT: False | |
| 36 | |
| 37 TRAIN: | |
| 38 ENABLE: False | |
| 39 OPTIMIZER: ADAMW | |
| 40 LR: 1.E-3 | |
| 41 BATCH_SIZE: 6 | |
| 42 EPOCHS: 20 | |
| 43 PATIENCE: 20 | |
| 44 LR_SCHEDULER: | |
| 45 NAME: 'onecycle' # use one-cycle learning rate scheduler | |
| 46 | |
| 47 TEST: | |
| 48 ENABLE: True | |
| 49 AUGMENTATION: False | |
| 50 FULL_IMG: False |