diff test-data/example.yaml @ 0:e434d9b9cd13 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/biapy/ commit 66b393a7118c81d86d0fd80780d2bd551c18f3f0
author iuc
date Thu, 09 Oct 2025 07:42:36 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/example.yaml	Thu Oct 09 07:42:36 2025 +0000
@@ -0,0 +1,50 @@
+# BiaPy version: 3.6.2
+
+SYSTEM:
+    NUM_CPUS: -1
+
+PROBLEM:
+    TYPE: SEMANTIC_SEG
+    NDIM: 2D
+  
+DATA: 
+    PATCH_SIZE: (256, 256, 1)
+    TRAIN:                                                                                                              
+        PATH: /path/to/data
+        GT_PATH: /path/to/data
+        IN_MEMORY: True
+    VAL:
+        SPLIT_TRAIN: 0.1
+    TEST:                                                                                                               
+        PATH: /path/to/data
+        GT_PATH: /path/to/data
+        IN_MEMORY: True
+        LOAD_GT: True
+        PADDING: (32,32)
+
+AUGMENTOR:
+    ENABLE: True
+    AUG_SAMPLES: False
+    RANDOM_ROT: True
+    VFLIP: True
+    HFLIP: True
+
+MODEL:
+    ARCHITECTURE: unet
+    FEATURE_MAPS: [16, 32, 64, 128, 256]
+    LOAD_CHECKPOINT: False
+
+TRAIN:
+    ENABLE: False
+    OPTIMIZER: ADAMW
+    LR: 1.E-3
+    BATCH_SIZE: 6
+    EPOCHS: 20
+    PATIENCE: 20
+    LR_SCHEDULER:
+        NAME: 'onecycle'    # use one-cycle learning rate scheduler
+  
+TEST:
+    ENABLE: True
+    AUGMENTATION: False
+    FULL_IMG: False