Mercurial > repos > iuc > binning_refiner

diff binning_refiner.xml @ 1:1c8d0916f97f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/binning_refiner/ commit 05bd671a4765eb97583bac21729b26bec808adcd"
author iuc
date Wed, 27 Apr 2022 18:46:46 +0000
parents f350d182f786
children 1b18b36bad5e
line wrap: on
line diff
--- a/binning_refiner.xml	Fri Feb 18 13:12:43 2022 +0000
+++ b/binning_refiner.xml	Wed Apr 27 18:46:46 2022 +0000
@@ -30,6 +30,7 @@
 Binning_refiner
 -i input_bin_dir
 -p 'refined'
+-m $m
 && mv 'refined_Binning_refiner_outputs/refined_contigs.txt' '$output_refined_contigs'
 && mv 'refined_Binning_refiner_outputs/refined_sources_and_length.txt' '$output_sources_and_length'
     ]]></command>
@@ -47,7 +48,8 @@
     <tests>
         <test expect_num_outputs="3">
             <param name="input_bins" value="MetaBAT_17.fa.gz,MetaBAT_18.fa.gz,MetaBAT_19.fa.gz,MetaBAT_20.fa.gz,MetaBAT_21.fa.gz,MetaBAT_22.fa.gz,MetaBAT_23.fa.gz,Concoct_1.fa.gz,Concoct_3.fa.gz,Concoct_8.fa.gz" ftype="fasta.gz"/>
-            <output_collection name="output_refined_bins" type="list" count="7">
+            <param name="m" value="256"/>
+            <output_collection name="output_refined_bins" type="list" count="8">
                 <element name="refined_1" ftype="fasta">
                     <assert_contents>
                         <has_size value="1320640"/>
@@ -97,6 +99,13 @@
                         <has_n_lines n="9219"/>
                     </assert_contents>
                 </element>
+                <element name="refined_8" ftype="fasta">
+                    <assert_contents>
+                        <has_size value="276224"/>
+                        <has_text text=">scaffold_955"/>
+                        <has_n_lines n="4554"/>
+                    </assert_contents>
+                </element>
             </output_collection>
             <output name="output_refined_contigs" file="output_refined_contigs.tabular" ftype="tabular"/>
             <output name="output_sources_and_length" file="output_sources_and_length.tabular" ftype="tabular"/>