Mercurial > repos > iuc > binning_refiner
changeset 1:1c8d0916f97f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/binning_refiner/ commit 05bd671a4765eb97583bac21729b26bec808adcd"
| author | iuc |
|---|---|
| date | Wed, 27 Apr 2022 18:46:46 +0000 |
| parents | f350d182f786 |
| children | 1b18b36bad5e |
| files | binning_refiner.xml macros.xml test-data/output_refined_contigs.tabular test-data/output_sources_and_length.tabular |
| diffstat | 4 files changed, 13 insertions(+), 2 deletions(-) [+] |
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--- a/binning_refiner.xml Fri Feb 18 13:12:43 2022 +0000 +++ b/binning_refiner.xml Wed Apr 27 18:46:46 2022 +0000 @@ -30,6 +30,7 @@ Binning_refiner -i input_bin_dir -p 'refined' +-m $m && mv 'refined_Binning_refiner_outputs/refined_contigs.txt' '$output_refined_contigs' && mv 'refined_Binning_refiner_outputs/refined_sources_and_length.txt' '$output_sources_and_length' ]]></command> @@ -47,7 +48,8 @@ <tests> <test expect_num_outputs="3"> <param name="input_bins" value="MetaBAT_17.fa.gz,MetaBAT_18.fa.gz,MetaBAT_19.fa.gz,MetaBAT_20.fa.gz,MetaBAT_21.fa.gz,MetaBAT_22.fa.gz,MetaBAT_23.fa.gz,Concoct_1.fa.gz,Concoct_3.fa.gz,Concoct_8.fa.gz" ftype="fasta.gz"/> - <output_collection name="output_refined_bins" type="list" count="7"> + <param name="m" value="256"/> + <output_collection name="output_refined_bins" type="list" count="8"> <element name="refined_1" ftype="fasta"> <assert_contents> <has_size value="1320640"/> @@ -97,6 +99,13 @@ <has_n_lines n="9219"/> </assert_contents> </element> + <element name="refined_8" ftype="fasta"> + <assert_contents> + <has_size value="276224"/> + <has_text text=">scaffold_955"/> + <has_n_lines n="4554"/> + </assert_contents> + </element> </output_collection> <output name="output_refined_contigs" file="output_refined_contigs.tabular" ftype="tabular"/> <output name="output_sources_and_length" file="output_sources_and_length.tabular" ftype="tabular"/>
--- a/macros.xml Fri Feb 18 13:12:43 2022 +0000 +++ b/macros.xml Wed Apr 27 18:46:46 2022 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.4.3</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">21.09</token> <xml name="requirements"> <requirements>
--- a/test-data/output_refined_contigs.tabular Fri Feb 18 13:12:43 2022 +0000 +++ b/test-data/output_refined_contigs.tabular Wed Apr 27 18:46:46 2022 +0000 @@ -6,3 +6,4 @@ refined_5 scaffold_1048,scaffold_1049,scaffold_1150,scaffold_126,scaffold_14,scaffold_232,scaffold_571,scaffold_66 refined_6 scaffold_1667,scaffold_186,scaffold_259,scaffold_301,scaffold_32,scaffold_461,scaffold_466,scaffold_659,scaffold_708 refined_7 scaffold_1140,scaffold_1172,scaffold_1303,scaffold_1510,scaffold_1614,scaffold_1649,scaffold_1814,scaffold_1852,scaffold_2104,scaffold_2153,scaffold_260,scaffold_273,scaffold_361,scaffold_369,scaffold_429,scaffold_589,scaffold_906,scaffold_987,scaffold_988 +refined_8 scaffold_1029,scaffold_1080,scaffold_1099,scaffold_1145,scaffold_1305,scaffold_1326,scaffold_1346,scaffold_1464,scaffold_1515,scaffold_1636,scaffold_1654,scaffold_1665,scaffold_1730,scaffold_1845,scaffold_1886,scaffold_1942,scaffold_1993,scaffold_2161,scaffold_2178,scaffold_817,scaffold_955
--- a/test-data/output_sources_and_length.tabular Fri Feb 18 13:12:43 2022 +0000 +++ b/test-data/output_sources_and_length.tabular Wed Apr 27 18:46:46 2022 +0000 @@ -6,3 +6,4 @@ refined_5 693.6 MetaBAT_21_fa_gz.fasta.gz refined_6 612.08 MetaBAT_22_fa_gz.fasta.gz refined_7 538.59 MetaBAT_23_fa_gz.fasta.gz +refined_8 265.02 Concoct_8_fa_gz.fasta.gz