Mercurial > repos > iuc > biobox_add_taxid

annotate test-data/test_gtdb_to_taxdump_file.tsv @ 3:8d0b2def5e65 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 04a067550f7d61ca8ff489e3de64efd0da3abcf1
author iuc
date Sun, 08 Sep 2024 14:37:41 +0000
parents 1e10251b9615
children
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1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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1 ncbi_taxonomy gtdb_taxonomy lca_frac target_tax_level lineage
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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2 s__Williamsia_A herbipolensis unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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3 s__Xylella fastidiosa s__Xylella fastidiosa 1.0 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__xanthomonadales;f__xanthomonadaceae;g__xylella;s__xylella fastidiosa
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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4 s__Paramaledivibacter caminithermalis s__Paramaledivibacter caminithermalis 1.0 species d__bacteria;p__bacillota_a;c__clostridia;o__peptostreptococcales;f__caminicellaceae;g__paramaledivibacter;s__paramaledivibacter caminithermalis
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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5 s__Flavisolibacter ginsengisoli s__Flavisolibacter ginsengisoli 1.0 species d__bacteria;p__bacteroidota;c__bacteroidia;o__chitinophagales;f__chitinophagaceae;g__flavisolibacter;s__flavisolibacter ginsengisoli
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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6 s__Anaeroplasma bactoclasticum c__Bacilli 1.0 class d__bacteria;p__bacillota;c__bacilli
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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7 s__Pseudoduganella sp001425045 unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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8 s__Albidovulum denitrificans unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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9 s__Tepidibacter formicigenes s__Tepidibacter formicigenes 1.0 species d__bacteria;p__bacillota_a;c__clostridia;o__peptostreptococcales;f__peptostreptococcaceae;g__tepidibacter;s__tepidibacter formicigenes
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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10 s__Thermosporothrix hazakensis unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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11 s__Exiguobacterium_A sp001423965 unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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12 s__Andreprevotia lacus s__Andreprevotia lacus 1.0 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__burkholderiales;f__chitinibacteraceae;g__andreprevotia;s__andreprevotia lacus
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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13 s__Nonlabens dokdonensis g__Nonlabens 1.0 genus d__bacteria;p__bacteroidota;c__bacteroidia;o__flavobacteriales;f__flavobacteriaceae;g__nonlabens
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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14 s__Pseudomonas aeruginosa s__Pseudomonas aeruginosa 0.99 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__pseudomonadales;f__pseudomonadaceae;g__pseudomonas;s__pseudomonas aeruginosa
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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15 s__Paracoccus denitrificans g__Paracoccus 1.0 genus d__bacteria;p__pseudomonadota;c__alphaproteobacteria;o__rhodobacterales;f__rhodobacteraceae;g__paracoccus
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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16 N/A unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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17 s__Anaerobranca californiensis s__Anaerobranca californiensis 1.0 species d__bacteria;p__bacillota_d;c__proteinivoracia;o__proteinivoracales;f__proteinivoraceae;g__anaerobranca;s__anaerobranca californiensis
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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18 s__Hydrotalea sandarakina s__Hydrotalea sandarakina 1.0 species d__bacteria;p__bacteroidota;c__bacteroidia;o__chitinophagales;f__chitinophagaceae;g__hydrotalea;s__hydrotalea sandarakina
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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19 s__Schwartzia succinivorans f__Selenomonadaceae 1.0 family d__bacteria;p__bacillota_c;c__negativicutes;o__selenomonadales;f__selenomonadaceae
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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20 s__Pseudoduganella sp001425265 unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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21 s__Lampropedia hyalina s__Lampropedia hyalina 1.0 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__burkholderiales;f__burkholderiaceae_b;g__lampropedia;s__lampropedia hyalina
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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22 s__Phycicoccus sp001428065 unclassified NA NA NA
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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23 s__Anaerosporobacter mobilis s__Anaerosporobacter mobilis 1.0 species d__bacteria;p__bacillota_a;c__clostridia;o__lachnospirales;f__lachnospiraceae;g__anaerosporobacter;s__anaerosporobacter mobilis
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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24 s__Meinhardsimonia xiamenensis s__Meinhardsimonia xiamenensis 1.0 species d__bacteria;p__pseudomonadota;c__alphaproteobacteria;o__rhodobacterales;f__rhodobacteraceae;g__meinhardsimonia;s__meinhardsimonia xiamenensis
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
iuc
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25 s__Desulfatibacillum alkenivorans s__Desulfatibacillum alkenivorans 1.0 species d__bacteria;p__desulfobacterota;c__desulfobacteria;o__desulfobacterales;f__desulfatibacillaceae;g__desulfatibacillum;s__desulfatibacillum alkenivorans