diff test-data/test_gtdb_to_taxdump_file.tsv @ 0:1e10251b9615 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
author iuc
date Sun, 25 Aug 2024 13:19:14 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_gtdb_to_taxdump_file.tsv	Sun Aug 25 13:19:14 2024 +0000
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+ncbi_taxonomy	gtdb_taxonomy	lca_frac	target_tax_level	lineage
+s__Williamsia_A herbipolensis	unclassified	NA	NA	NA
+s__Xylella fastidiosa	s__Xylella fastidiosa	1.0	species	d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__xanthomonadales;f__xanthomonadaceae;g__xylella;s__xylella fastidiosa
+s__Paramaledivibacter caminithermalis	s__Paramaledivibacter caminithermalis	1.0	species	d__bacteria;p__bacillota_a;c__clostridia;o__peptostreptococcales;f__caminicellaceae;g__paramaledivibacter;s__paramaledivibacter caminithermalis
+s__Flavisolibacter ginsengisoli	s__Flavisolibacter ginsengisoli	1.0	species	d__bacteria;p__bacteroidota;c__bacteroidia;o__chitinophagales;f__chitinophagaceae;g__flavisolibacter;s__flavisolibacter ginsengisoli
+s__Anaeroplasma bactoclasticum	c__Bacilli	1.0	class	d__bacteria;p__bacillota;c__bacilli
+s__Pseudoduganella sp001425045	unclassified	NA	NA	NA
+s__Albidovulum denitrificans	unclassified	NA	NA	NA
+s__Tepidibacter formicigenes	s__Tepidibacter formicigenes	1.0	species	d__bacteria;p__bacillota_a;c__clostridia;o__peptostreptococcales;f__peptostreptococcaceae;g__tepidibacter;s__tepidibacter formicigenes
+s__Thermosporothrix hazakensis	unclassified	NA	NA	NA
+s__Exiguobacterium_A sp001423965	unclassified	NA	NA	NA
+s__Andreprevotia lacus	s__Andreprevotia lacus	1.0	species	d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__burkholderiales;f__chitinibacteraceae;g__andreprevotia;s__andreprevotia lacus
+s__Nonlabens dokdonensis	g__Nonlabens	1.0	genus	d__bacteria;p__bacteroidota;c__bacteroidia;o__flavobacteriales;f__flavobacteriaceae;g__nonlabens
+s__Pseudomonas aeruginosa	s__Pseudomonas aeruginosa	0.99	species	d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__pseudomonadales;f__pseudomonadaceae;g__pseudomonas;s__pseudomonas aeruginosa
+s__Paracoccus denitrificans	g__Paracoccus	1.0	genus	d__bacteria;p__pseudomonadota;c__alphaproteobacteria;o__rhodobacterales;f__rhodobacteraceae;g__paracoccus
+N/A	unclassified	NA	NA	NA
+s__Anaerobranca californiensis	s__Anaerobranca californiensis	1.0	species	d__bacteria;p__bacillota_d;c__proteinivoracia;o__proteinivoracales;f__proteinivoraceae;g__anaerobranca;s__anaerobranca californiensis
+s__Hydrotalea sandarakina	s__Hydrotalea sandarakina	1.0	species	d__bacteria;p__bacteroidota;c__bacteroidia;o__chitinophagales;f__chitinophagaceae;g__hydrotalea;s__hydrotalea sandarakina
+s__Schwartzia succinivorans	f__Selenomonadaceae	1.0	family	d__bacteria;p__bacillota_c;c__negativicutes;o__selenomonadales;f__selenomonadaceae
+s__Pseudoduganella sp001425265	unclassified	NA	NA	NA
+s__Lampropedia hyalina	s__Lampropedia hyalina	1.0	species	d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__burkholderiales;f__burkholderiaceae_b;g__lampropedia;s__lampropedia hyalina
+s__Phycicoccus sp001428065	unclassified	NA	NA	NA
+s__Anaerosporobacter mobilis	s__Anaerosporobacter mobilis	1.0	species	d__bacteria;p__bacillota_a;c__clostridia;o__lachnospirales;f__lachnospiraceae;g__anaerosporobacter;s__anaerosporobacter mobilis
+s__Meinhardsimonia xiamenensis	s__Meinhardsimonia xiamenensis	1.0	species	d__bacteria;p__pseudomonadota;c__alphaproteobacteria;o__rhodobacterales;f__rhodobacteraceae;g__meinhardsimonia;s__meinhardsimonia xiamenensis
+s__Desulfatibacillum alkenivorans	s__Desulfatibacillum alkenivorans	1.0	species	d__bacteria;p__desulfobacterota;c__desulfobacteria;o__desulfobacterales;f__desulfatibacillaceae;g__desulfatibacillum;s__desulfatibacillum alkenivorans