Mercurial > repos > iuc > biobox_add_taxid

comparison test-data/test_gtdb_to_taxdump_file.tsv @ 0:1e10251b9615 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
author iuc
date Sun, 25 Aug 2024 13:19:14 +0000
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-1:000000000000 0:1e10251b9615
1 ncbi_taxonomy gtdb_taxonomy lca_frac target_tax_level lineage
2 s__Williamsia_A herbipolensis unclassified NA NA NA
3 s__Xylella fastidiosa s__Xylella fastidiosa 1.0 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__xanthomonadales;f__xanthomonadaceae;g__xylella;s__xylella fastidiosa
4 s__Paramaledivibacter caminithermalis s__Paramaledivibacter caminithermalis 1.0 species d__bacteria;p__bacillota_a;c__clostridia;o__peptostreptococcales;f__caminicellaceae;g__paramaledivibacter;s__paramaledivibacter caminithermalis
5 s__Flavisolibacter ginsengisoli s__Flavisolibacter ginsengisoli 1.0 species d__bacteria;p__bacteroidota;c__bacteroidia;o__chitinophagales;f__chitinophagaceae;g__flavisolibacter;s__flavisolibacter ginsengisoli
6 s__Anaeroplasma bactoclasticum c__Bacilli 1.0 class d__bacteria;p__bacillota;c__bacilli
7 s__Pseudoduganella sp001425045 unclassified NA NA NA
8 s__Albidovulum denitrificans unclassified NA NA NA
9 s__Tepidibacter formicigenes s__Tepidibacter formicigenes 1.0 species d__bacteria;p__bacillota_a;c__clostridia;o__peptostreptococcales;f__peptostreptococcaceae;g__tepidibacter;s__tepidibacter formicigenes
10 s__Thermosporothrix hazakensis unclassified NA NA NA
11 s__Exiguobacterium_A sp001423965 unclassified NA NA NA
12 s__Andreprevotia lacus s__Andreprevotia lacus 1.0 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__burkholderiales;f__chitinibacteraceae;g__andreprevotia;s__andreprevotia lacus
13 s__Nonlabens dokdonensis g__Nonlabens 1.0 genus d__bacteria;p__bacteroidota;c__bacteroidia;o__flavobacteriales;f__flavobacteriaceae;g__nonlabens
14 s__Pseudomonas aeruginosa s__Pseudomonas aeruginosa 0.99 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__pseudomonadales;f__pseudomonadaceae;g__pseudomonas;s__pseudomonas aeruginosa
15 s__Paracoccus denitrificans g__Paracoccus 1.0 genus d__bacteria;p__pseudomonadota;c__alphaproteobacteria;o__rhodobacterales;f__rhodobacteraceae;g__paracoccus
16 N/A unclassified NA NA NA
17 s__Anaerobranca californiensis s__Anaerobranca californiensis 1.0 species d__bacteria;p__bacillota_d;c__proteinivoracia;o__proteinivoracales;f__proteinivoraceae;g__anaerobranca;s__anaerobranca californiensis
18 s__Hydrotalea sandarakina s__Hydrotalea sandarakina 1.0 species d__bacteria;p__bacteroidota;c__bacteroidia;o__chitinophagales;f__chitinophagaceae;g__hydrotalea;s__hydrotalea sandarakina
19 s__Schwartzia succinivorans f__Selenomonadaceae 1.0 family d__bacteria;p__bacillota_c;c__negativicutes;o__selenomonadales;f__selenomonadaceae
20 s__Pseudoduganella sp001425265 unclassified NA NA NA
21 s__Lampropedia hyalina s__Lampropedia hyalina 1.0 species d__bacteria;p__pseudomonadota;c__gammaproteobacteria;o__burkholderiales;f__burkholderiaceae_b;g__lampropedia;s__lampropedia hyalina
22 s__Phycicoccus sp001428065 unclassified NA NA NA
23 s__Anaerosporobacter mobilis s__Anaerosporobacter mobilis 1.0 species d__bacteria;p__bacillota_a;c__clostridia;o__lachnospirales;f__lachnospiraceae;g__anaerosporobacter;s__anaerosporobacter mobilis
24 s__Meinhardsimonia xiamenensis s__Meinhardsimonia xiamenensis 1.0 species d__bacteria;p__pseudomonadota;c__alphaproteobacteria;o__rhodobacterales;f__rhodobacteraceae;g__meinhardsimonia;s__meinhardsimonia xiamenensis
25 s__Desulfatibacillum alkenivorans s__Desulfatibacillum alkenivorans 1.0 species d__bacteria;p__desulfobacterota;c__desulfobacteria;o__desulfobacterales;f__desulfatibacillaceae;g__desulfatibacillum;s__desulfatibacillum alkenivorans