Mercurial > repos > iuc > brew3r_r

annotate test-data/input2.gtf @ 1:3198f52bffaa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
author iuc
date Tue, 18 Jun 2024 05:36:32 +0000
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3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
1 chr12 HAVANA gene 11208360 11208972 . - . gene_id "ENSMUSG00000047002.2"; gene_type "protein_coding"; gene_name "Msgn1"; level 2; mgi_id "MGI:1860483"; havana_gene "OTTMUSG00000065713.1";
3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
2 chr12 HAVANA transcript 11208360 11208972 . - . gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
3 chr12 HAVANA exon 11208360 11208972 . - . gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
4 chr12 HAVANA CDS 11208385 11208948 . - 0 gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
5 chr12 HAVANA start_codon 11208946 11208948 . - 0 gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
6 chr12 HAVANA stop_codon 11208382 11208384 . - 0 gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
7 chr12 HAVANA UTR 11208360 11208384 . - . gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
3198f52bffaa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit fa525468780f3dea175da15852b1b8c17e1a80d3
iuc
parents:
diff changeset
8 chr12 HAVANA UTR 11208949 11208972 . - . gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";