Mercurial > repos > iuc > busco

annotate test-data/genome_results/short_summary_cached @ 21:2babe6d5c561 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
author iuc
date Fri, 30 Aug 2024 15:19:56 +0000
parents 2a5b8b9936bf
children
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2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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1 # BUSCO version is: 5.7.1
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2 # The lineage dataset is: archaea_odb10 (Creation date: 2021-02-23, number of genomes: 404, number of BUSCOs: 194)
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3 # Summarized benchmarking in BUSCO notation for file /tmp/tmprlx1s52v/files/e/8/d/dataset_e8d136af-46c1-4ffa-abaf-e8899526d2b0.dat
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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4 # BUSCO was run in mode: prok_genome_prod
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5 # Gene predictor used: prodigal
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6
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7 ***** Results: *****
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8
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9 C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:194
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10 0 Complete BUSCOs (C)
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11 0 Complete and single-copy BUSCOs (S)
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12 0 Complete and duplicated BUSCOs (D)
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13 0 Fragmented BUSCOs (F)
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14 194 Missing BUSCOs (M)
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15 194 Total BUSCO groups searched
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16
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17 Assembly Statistics:
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18 1 Number of scaffolds
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19 1 Number of contigs
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20 62370 Total length
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21 0.000% Percent gaps
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22 62 KB Scaffold N50
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23 62 KB Contigs N50
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26 Dependencies and versions:
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27 hmmsearch: 3.1
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28 bbtools: 39.01
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29 prodigal: 2.6.3
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2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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30 python: sys.version_info(major=3, minor=9, micro=19, releaselevel='final', serial=0)
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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31 busco: 5.7.1