Mercurial > repos > iuc > busco
annotate test-data/genome_results_metaeuk/short_summary @ 18:94170eee0ad8 draft
planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
author | iuc |
---|---|
date | Fri, 14 Apr 2023 08:13:46 +0000 |
parents | bb935709506a |
children | 2a5b8b9936bf |
rev | line source |
---|---|
16
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
1 # BUSCO version is: 5.4.4 |
10
2dd755c1c6ff
"planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents:
9
diff
changeset
|
2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) |
16
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
3 # Summarized benchmarking in BUSCO notation for file /tmp/tmprqvmp912/files/000/dataset_28.dat |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
4 # BUSCO was run in mode: euk_genome_met |
9
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
5 # Gene predictor used: metaeuk |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
6 |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
7 ***** Results: ***** |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
8 |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
9 C:0.2%[S:0.2%,D:0.0%],F:0.0%,M:99.8%,n:1013 |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
10 2 Complete BUSCOs (C) |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
11 2 Complete and single-copy BUSCOs (S) |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
12 0 Complete and duplicated BUSCOs (D) |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
13 0 Fragmented BUSCOs (F) |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
14 1011 Missing BUSCOs (M) |
cf13a1e03e5b
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents:
diff
changeset
|
15 1013 Total BUSCO groups searched |
10
2dd755c1c6ff
"planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents:
9
diff
changeset
|
16 |
16
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
17 Assembly Statistics: |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
18 1 Number of scaffolds |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
19 1 Number of contigs |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
20 62370 Total length |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
21 0.000% Percent gaps |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
22 62 KB Scaffold N50 |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
23 62 KB Contigs N50 |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
24 |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
25 |
10
2dd755c1c6ff
"planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents:
9
diff
changeset
|
26 Dependencies and versions: |
2dd755c1c6ff
"planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents:
9
diff
changeset
|
27 hmmsearch: 3.1 |
16
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
28 bbtools: 39.01 |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
29 metaeuk: 6.a5d39d9 |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
iuc
parents:
10
diff
changeset
|
30 busco: 5.4.4 |