Mercurial > repos > iuc > busco
changeset 9:cf13a1e03e5b draft
"planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
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--- a/busco.xml Wed Dec 30 14:07:37 2020 +0000 +++ b/busco.xml Mon Mar 15 21:27:17 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="busco" name="Busco" profile="18.01" version="@TOOL_VERSION@"> +<tool id="busco" name="Busco" profile="20.01" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> <description>assess genome assembly and annotation completeness</description> <macros> <import>macros.xml</import> @@ -6,129 +6,262 @@ <requirements> <requirement type="package" version="@TOOL_VERSION@">busco</requirement> <requirement type="package" version="1.32">tar</requirement> + <requirement type="package" version="1">fonts-conda-ecosystem</requirement> </requirements> + <version_command>busco --version</version_command> <command><![CDATA[ if [ -z "\$AUGUSTUS_CONFIG_PATH" ] ; then BUSCO_PATH=\$(dirname \$(which busco)) ; export AUGUSTUS_CONFIG_PATH=\$(realpath \${BUSCO_PATH}/../config) ; fi && cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ && export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && -#if $adv.aug_prediction.augustus_mode == 'history': +#if $busco_mode.mode == 'geno' and $busco_mode.use_augustus.use_augustus_selector == 'yes' and $busco_mode.use_augustus.aug_prediction.augustus_mode == 'history': ## Using an augustus model from history, we need to unzip it and let augustus find it mkdir -p 'augustus_dir/species/' && - tar -C 'augustus_dir/species/' -xzf '${adv.aug_prediction.augustus_model}' && + tar -C 'augustus_dir/species/' -xzf '${busco_mode.use_augustus.aug_prediction.augustus_model}' && #end if busco --in '${input}' --lineage_dataset '${lineage_dataset}' --update-data ---mode '${mode}' --o busco_galaxy +--mode '${busco_mode.mode}' +--out busco_galaxy --cpu \${GALAXY_SLOTS:-4} --evalue ${adv.evalue} -${adv.long} --limit ${adv.limit} -#if $adv.aug_prediction.augustus_mode == 'builtin': - --augustus_species '${adv.aug_prediction.augustus_species}' -#else if $adv.aug_prediction.augustus_mode == 'history': - --augustus_species local + +#if $adv.auto_lineage: + $adv.auto_lineage +#end if +#if $busco_mode.mode == 'geno' and $busco_mode.use_augustus.use_augustus_selector == 'yes': + + ${busco_mode.use_augustus.long} + --augustus + + #if $busco_mode.use_augustus.aug_prediction.augustus_mode == 'builtin': + --augustus_species '${busco_mode.use_augustus.aug_prediction.augustus_species}' + #else if $busco_mode.use_augustus.aug_prediction.augustus_mode == 'history': + --augustus_species local + #end if +#end if + +#if $adv.outputs and 'image' in $adv.outputs: + && + mkdir BUSCO_summaries + && + ls -l busco_galaxy/run_*/ && + cp busco_galaxy/short_summary.*.txt BUSCO_summaries/ + && + generate_plot.py -wd BUSCO_summaries -rt specific #end if - ]]></command> +]]> </command> <inputs> - <param type="data" name="input" format="fasta" label="Sequences to analyse" help="genome, transcriptome or proteome" /> - <param argument="--mode" type="select" label="Mode"> - <option value="geno">Genome</option> - <option value="tran">Transcriptome</option> - <option value="prot">Proteome</option> - </param> + <param type="data" name="input" format="fasta" label="Sequences to analyse" help="Can be an assembled genome or transcriptome (DNA), or protein sequences from an annotated gene set." /> + <conditional name="busco_mode"> + <param argument="--mode" type="select" label="Mode"> + <option value="geno">Genome assemblies (DNA)</option> + <option value="tran">Transcriptome assemblies (DNA)</option> + <option value="prot">annotated gene sets (protein)</option> + </param> + <when value="geno"> + <conditional name="use_augustus"> + <param name="use_augustus_selector" type="select" label="Use Augustus instead of Metaeuk"> + <option value="yes">Yes, use Augustus</option> + <option value="no" selected="true">Use Metaeuk</option> + </param> + <when value="no" /> + <when value="yes"> + <conditional name="aug_prediction"> + <param name="augustus_mode" type="select" label="Augustus species model"> + <option value="no" selected="true">Use the default species for selected lineage</option> + <option value="builtin">Use another predefined species model</option> + <option value="history">Use a custom species model</option> + </param> + <when value="no" /> + <when value="history"> + <param name="augustus_model" type="data" format="augustus" label="Augustus model" /> + </when> + <when value="builtin"> + <param name="augustus_species" type="select" label="Augustus species model"> + <expand macro="augustus_species" /> + </param> + </when> + </conditional> + <param argument="--long" type="boolean" checked="false" truevalue="--long" falsevalue="" label="Optimization mode Augustus self-training" help="Adds considerably to run time, but can improve results for some non-model organisms" /> + </when> + </conditional> + </when> + <when value="tran" /> + <when value="prot" /> + </conditional> <param argument="--lineage_dataset" type="select" label="Lineage"> - <expand macro="lineages"/> + <expand macro="lineages" /> </param> <section name="adv" title="Advanced Options" expanded="False"> - <param argument="--evalue" type="float" value="0.01" label="E-value cutoff for BLAST searches."/> - <param argument="--limit" type="integer" value="3" label="How many candidate regions to consider"/> - - <conditional name="aug_prediction"> - <param name="augustus_mode" type="select" label="Augustus species model"> - <option value="no" selected="true">Use the default species for selected lineage</option> - <option value="builtin">Use another predefined species model</option> - <option value="history">Use a custom species model</option> - </param> - <when value="no"/> - <when value="history"> - <param name="augustus_model" type="data" format="augustus" label="Augustus model"/> - </when> - <when value="builtin"> - <param name="augustus_species" type="select" label="Augustus species model"> - <expand macro="augustus_species"/> - </param> - </when> - </conditional> - <param argument="--long" type="boolean" checked="false" truevalue="--long" falsevalue="" label="Optimization mode Augustus self-training" help="Adds considerably to run time, but can improve results for some non-model organisms"/> + <param argument="--evalue" type="float" value="0.001" min="0" max="1" label="E-value cutoff for BLAST searches." /> + <param argument="--limit" type="integer" value="3" label="How many candidate regions to consider" /> + <param name="auto_lineage" type="select" optional="true" label="Run auto-lineage to find optimal lineage path"> + <option value="--auto-lineage">Run auto-lineage to find optimum lineage path</option> + <option value="--auto-lineage-prok">Run auto-lineage just on non-eukaryote trees to find optimum lineage path</option> + <option value="--auto-lineage-euk">Run auto-placement just on eukaryote tree to find optimum lineage path</option> + </param> + <param name="outputs" type="select" optional="true" multiple="true" label="Which outputs should be generated"> + <option value="short_summary">short summary text</option> + <option value="missing">list with missing IDs</option> + <option value="image">summary image</option> + </param> </section> </inputs> <outputs> - <data name='busco_sum' format='txt' label="${tool.name} on ${on_string}: short summary" from_work_dir="busco_galaxy/run_*/short_summary.txt"/> - <data name='busco_table' format='tabular' label="${tool.name} on ${on_string}: full table" from_work_dir="busco_galaxy/run_*/full_table.tsv"/> - <data name='busco_missing' format='tabular' label="${tool.name} on ${on_string}: missing buscos" from_work_dir="busco_galaxy/run_*/missing_busco_list.tsv"/> + <data name='busco_sum' format='txt' label="${tool.name} on ${on_string}: short summary" from_work_dir="busco_galaxy/run_*/short_summary.txt"> + <filter>adv['outputs'] and 'short_summary' in adv['outputs']</filter> + </data> + <data name='busco_table' format='tabular' label="${tool.name} on ${on_string}: full table" from_work_dir="busco_galaxy/run_*/full_table.tsv" /> + <data name='busco_missing' format='tabular' label="${tool.name} on ${on_string}: missing buscos" from_work_dir="busco_galaxy/run_*/missing_busco_list.tsv"> + <filter>adv['outputs'] and 'missing' in adv['outputs']</filter> + </data> + <data name='summary_image' format='png' label="${tool.name} on ${on_string}: summary image" from_work_dir="BUSCO_summaries/busco_figure.png"> + <filter>adv['outputs'] and 'image' in adv['outputs']</filter> + </data> </outputs> <tests> - <test> - <param name="input" value="genome.fa"/> - <param name="lineage_dataset" value="arthropoda_odb10"/> - <param name="mode" value="geno"/> - <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4"/> - <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4"/> + <test expect_num_outputs="3"> + <param name="input" value="genome.fa" /> + <param name="lineage_dataset" value="arthropoda_odb10" /> + <conditional name="busco_mode"> + <param name="mode" value="geno" /> + <conditional name="use_augustus"> + <param name="use_augustus_selector" value="yes" /> + </conditional> + </conditional> + <section name="adv"> + <param name="outputs" value="short_summary,missing" /> + </section> + <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4" /> + <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" /> <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4"> <assert_contents> <has_text text="# BUSCO version is: @TOOL_VERSION@" /> </assert_contents> </output> </test> - <test> - <param name="input" value="proteome.fa"/> - <param name="lineage_dataset" value="arthropoda_odb10"/> - <param name="mode" value="prot"/> - <output name="busco_sum" file="proteome_results/short_summary" compare="diff" lines_diff="4"/> - <output name="busco_table" file="proteome_results/full_table" compare="diff" lines_diff="4"/> - <output name="busco_missing" file="proteome_results/missing_buscos_list" compare="diff" lines_diff="4"/> + <test expect_num_outputs="4"> + <param name="input" value="proteome.fa" /> + <param name="lineage_dataset" value="arthropoda_odb10" /> + <conditional name="busco_mode"> + <param name="mode" value="prot" /> + </conditional> + <section name="adv"> + <param name="outputs" value="short_summary,missing,image" /> + </section> + <output name="busco_sum" file="proteome_results/short_summary" compare="diff" lines_diff="4" /> + <output name="busco_table" file="proteome_results/full_table" compare="diff" lines_diff="4" /> + <output name="busco_missing" file="proteome_results/missing_buscos_list" compare="diff" lines_diff="4" /> + <output name="summary_image" file="proteome_results/summary.png" compare="sim_size" /> </test> - <test> - <param name="input" value="transcriptome.fa"/> - <param name="lineage_dataset" value="arthropoda_odb10"/> - <param name="mode" value="tran"/> - <output name="busco_sum" file="transcriptome_results/short_summary" compare="diff" lines_diff="4"/> - <output name="busco_table" file="transcriptome_results/full_table" compare="diff" lines_diff="4"/> - <output name="busco_missing" file="transcriptome_results/missing_buscos_list" compare="diff" lines_diff="4"/> + <test expect_num_outputs="4"> + <param name="input" value="transcriptome.fa" /> + <param name="lineage_dataset" value="arthropoda_odb10" /> + <conditional name="busco_mode"> + <param name="mode" value="tran" /> + </conditional> + <section name="adv"> + <param name="auto_lineage" value="--auto-lineage" /> + <param name="outputs" value="short_summary,missing,image" /> + </section> + <output name="busco_sum" file="transcriptome_results/short_summary" compare="diff" lines_diff="4" /> + <output name="busco_table" file="transcriptome_results/full_table" compare="diff" lines_diff="4" /> + <output name="busco_missing" file="transcriptome_results/missing_buscos_list" compare="diff" lines_diff="4" /> + <output name="summary_image" file="transcriptome_results/summary.png" compare="sim_size" /> </test> - <test> - <param name="input" value="genome.fa"/> - <param name="lineage_dataset" value="arthropoda_odb10"/> - <param name="mode" value="geno"/> - <param name="adv|aug_prediction|augustus_mode" value="builtin"/> - <param name="adv|aug_prediction|augustus_species" value="human"/> - <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4"/> - <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4"/> - <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4"/> + <test expect_num_outputs="2"> + <param name="input" value="genome.fa" /> + <param name="lineage_dataset" value="arthropoda_odb10" /> + <conditional name="busco_mode"> + <param name="mode" value="geno" /> + <conditional name="use_augustus"> + <param name="use_augustus_selector" value="yes" /> + <conditional name="aug_prediction"> + <param name="augustus_mode" value="builtin" /> + <param name="augustus_species" value="human" /> + </conditional> + </conditional> + </conditional> + <section name="adv"> + <param name="outputs" value="short_summary" /> + </section> + <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4" /> + <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" /> </test> - <test> - <param name="input" value="genome.fa"/> - <param name="lineage_dataset" value="arthropoda_odb10"/> - <param name="mode" value="geno"/> - <param name="adv|aug_prediction|augustus_mode" value="history"/> - <param name="adv|aug_prediction|augustus_model" value="local.tar.gz" ftype="augustus"/> - <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4"/> - <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4"/> - <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4"/> + <test expect_num_outputs="3"> + <param name="input" value="genome.fa" /> + <param name="lineage_dataset" value="arthropoda_odb10" /> + <conditional name="busco_mode"> + <param name="mode" value="geno" /> + <conditional name="use_augustus"> + <param name="use_augustus_selector" value="yes" /> + <conditional name="aug_prediction"> + <param name="augustus_mode" value="history" /> + <param name="augustus_model" value="local.tar.gz" ftype="augustus" /> + </conditional> + </conditional> + </conditional> + <section name="adv"> + <param name="outputs" value="short_summary,missing" /> + </section> + <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4" /> + <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" /> + <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4" /> + </test> + <test expect_num_outputs="4"> + <param name="input" value="genome.fa" /> + <param name="lineage_dataset" value="arthropoda_odb10" /> + <conditional name="busco_mode"> + <param name="mode" value="geno" /> + <conditional name="use_augustus"> + <param name="use_augustus_selector" value="no" /> + </conditional> + </conditional> + <section name="adv"> + <param name="outputs" value="short_summary,missing,image" /> + </section> + <output name="busco_sum" file="genome_results_metaeuk/short_summary" compare="diff" lines_diff="4" /> + <output name="busco_table" file="genome_results_metaeuk/full_table" compare="diff" lines_diff="4" /> + <output name="busco_missing" file="genome_results_metaeuk/missing_buscos_list" compare="diff" lines_diff="4" /> + <output name="summary_image" file="genome_results_metaeuk/summary.png" compare="sim_size" /> </test> </tests> - <help> + <help><![CDATA[ + + BUSCO: assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs +-------------------------------------------------------------------------------------------------------------- + +Interpreting the results +^^^^^^^^^^^^^^^^^^^^^^^^ + +BUSCO_ attempts to provide a quantitative assessment of the completeness in terms of the expected gene content of a +genome assembly, transcriptome, or annotated gene set. The results are simplified into categories of Complete +and single-copy, Complete and duplicated, Fragmented, or Missing BUSCOs. + +BUSCO completeness results make sense only in the context of the biology of your organism. +You have to understand whether missing or duplicated genes are of biological or technical origin. +For instance, a high level of duplication may be explained by a recent whole duplication event +(biological) or a chimeric assembly of haplotypes (technical). +Transcriptomes and protein sets that are not filtered for isoforms will lead to a high proportion of duplicates. +Therefore you should filter them before a BUSCO analysis. +Finally, focusing on specific tissues or specific life stages and conditions in a transcriptomic experiment +is unlikely to produce a BUSCO-complete transcriptome. In this case, consistency across your samples +is what you will be aiming for. + +For more information please refer to the Busco_ `user guide <https: / /busco.ezlab.org /busco_userguide.html#interpreting-the-results>`_ +. .. _BUSCO: http://busco.ezlab.org/ - </help> - <expand macro="citations"/> + + ]]> </help> + <expand macro="citations" /> </tool>
--- a/macros.xml Wed Dec 30 14:07:37 2020 +0000 +++ b/macros.xml Mon Mar 15 21:27:17 2021 +0000 @@ -1,6 +1,7 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">4.1.4</token> + <token name="@TOOL_VERSION@">5.0.0</token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="citations"> <citations>
--- a/test-data/genome_results/full_table Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/genome_results/full_table Mon Mar 15 21:27:17 2021 +0000 @@ -1,6 +1,6 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Busco id Status Sequence Gene Start Gene End Score Length OrthoDB url Description +# Busco id Status Sequence Gene Start Gene End Strand Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing 997at6656 Missing @@ -509,7 +509,7 @@ 93535at6656 Missing 93797at6656 Missing 94054at6656 Missing -94238at6656 Complete sample 34764 38486 60.7 116 https://www.orthodb.org/v10?query=94238at6656 checkpoint protein HUS1 +94238at6656 Complete sample 34764 38486 - 60.7 116 https://www.orthodb.org/v10?query=94238at6656 checkpoint protein HUS1 94263at6656 Missing 94304at6656 Missing 94473at6656 Missing
--- a/test-data/genome_results/missing_buscos_list Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/genome_results/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 @@ -1,4 +1,4 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id 100070at6656
--- a/test-data/genome_results/short_summary Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/genome_results/short_summary Mon Mar 15 21:27:17 2021 +0000 @@ -1,7 +1,8 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/d/c/0/dataset_dc06dd53-8ed0-477c-b8bd-dd9fe68fd7e0.dat +# Summarized benchmarking in BUSCO notation for file /tmp/tmp7tgu744e/files/3/3/6/dataset_336adf79-955a-4ca8-aeda-96fc1fce9a4c.dat # BUSCO was run in mode: genome +# Gene predictor used: augustus ***** Results: *****
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genome_results_metaeuk/full_table Mon Mar 15 21:27:17 2021 +0000 @@ -0,0 +1,1016 @@ +# BUSCO version is: 5.0.0 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# Busco id Status Sequence Gene Start Gene End Strand Score Length OrthoDB url Description +774at6656 Missing +980at6656 Missing +997at6656 Missing +1166at6656 Missing +1885at6656 Missing +1990at6656 Missing +2148at6656 Missing +2456at6656 Missing +2473at6656 Missing +3310at6656 Missing +3585at6656 Missing +3644at6656 Missing +4136at6656 Missing +4227at6656 Missing +4864at6656 Missing +5277at6656 Missing +5616at6656 Missing +6453at6656 Missing +6563at6656 Missing +6715at6656 Missing +6820at6656 Missing +7210at6656 Missing +8145at6656 Missing +8495at6656 Missing +8847at6656 Missing +8913at6656 Missing +9647at6656 Missing +9648at6656 Missing +10240at6656 Missing +10573at6656 Missing +11384at6656 Missing +12029at6656 Missing +12174at6656 Missing +12383at6656 Missing +12771at6656 Missing +12846at6656 Missing +13019at6656 Missing +13051at6656 Missing +13736at6656 Missing +13833at6656 Missing +13858at6656 Missing +13890at6656 Missing +13934at6656 Missing +14090at6656 Missing +14257at6656 Missing +14447at6656 Missing +14995at6656 Missing +15200at6656 Missing +15697at6656 Missing +15905at6656 Missing +16061at6656 Missing +16084at6656 Missing +16220at6656 Missing +16630at6656 Missing +16648at6656 Missing +17096at6656 Missing +17122at6656 Missing +17128at6656 Missing +17748at6656 Missing +18036at6656 Missing +18055at6656 Missing +18073at6656 Missing +18630at6656 Missing +18929at6656 Missing +19044at6656 Missing +19058at6656 Missing +19104at6656 Missing +19129at6656 Missing +19208at6656 Missing +19289at6656 Missing +19590at6656 Missing +19760at6656 Missing +20093at6656 Missing +20162at6656 Missing +20267at6656 Missing +20935at6656 Missing +20936at6656 Missing +21019at6656 Missing 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Missing +30962at6656 Missing +31014at6656 Missing +31119at6656 Missing +31196at6656 Missing +31333at6656 Missing +31480at6656 Missing +31615at6656 Missing +31634at6656 Missing +31820at6656 Missing +31886at6656 Missing +31919at6656 Missing +32694at6656 Missing +32733at6656 Missing +32851at6656 Missing +33187at6656 Missing +33566at6656 Missing +33794at6656 Missing +34586at6656 Missing +34917at6656 Missing +35035at6656 Missing +35548at6656 Missing +35680at6656 Missing +35708at6656 Missing +35995at6656 Missing +36374at6656 Missing +36387at6656 Missing +36403at6656 Missing +36463at6656 Missing +37030at6656 Missing +37297at6656 Missing +37387at6656 Missing +37678at6656 Missing +38140at6656 Missing +38186at6656 Missing +38303at6656 Missing +38391at6656 Missing +38567at6656 Missing +38819at6656 Missing +38928at6656 Missing +39506at6656 Missing +39548at6656 Missing +39783at6656 Missing +39809at6656 Missing +39821at6656 Missing +40065at6656 Missing +40092at6656 Missing +40213at6656 Missing +40240at6656 Missing +40319at6656 Missing +40323at6656 Missing +40399at6656 Missing +40691at6656 Missing +40929at6656 Missing +41522at6656 Missing +41990at6656 Missing +42577at6656 Missing +42622at6656 Missing +42819at6656 Missing +42842at6656 Missing +42929at6656 Missing +42943at6656 Missing +42992at6656 Missing +43045at6656 Missing +43236at6656 Missing +43245at6656 Missing +43540at6656 Missing +43728at6656 Missing +43774at6656 Missing +44001at6656 Missing +44123at6656 Missing +44359at6656 Missing +44389at6656 Missing +44504at6656 Missing +44630at6656 Missing +44694at6656 Missing +44953at6656 Missing +45131at6656 Missing +45367at6656 Missing +45528at6656 Missing +45556at6656 Missing +45732at6656 Missing +45915at6656 Missing +46430at6656 Missing +46437at6656 Missing +46671at6656 Missing +46679at6656 Missing +46692at6656 Missing +46750at6656 Missing +46960at6656 Missing +47270at6656 Missing +47443at6656 Missing +47495at6656 Missing +47500at6656 Missing +47967at6656 Missing +48195at6656 Missing +48466at6656 Missing +48519at6656 Missing +48657at6656 Missing +48836at6656 Missing +49070at6656 Missing +49526at6656 Missing +49936at6656 Missing +50191at6656 Missing +50493at6656 Missing +50740at6656 Missing +50792at6656 Missing +50947at6656 Missing +51037at6656 Missing +51280at6656 Missing +51364at6656 Missing +51757at6656 Missing +52210at6656 Missing +52224at6656 Missing +52320at6656 Missing +52422at6656 Missing +52643at6656 Missing +52828at6656 Missing +53201at6656 Missing +53243at6656 Missing +53298at6656 Missing +53318at6656 Missing +53993at6656 Missing +54236at6656 Missing +54527at6656 Missing +54679at6656 Missing +55036at6656 Missing +55094at6656 Missing +55108at6656 Missing +55260at6656 Missing +55417at6656 Missing +55450at6656 Missing +55599at6656 Missing +55847at6656 Missing +55932at6656 Missing +55953at6656 Missing +56010at6656 Missing +56322at6656 Missing +56449at6656 Missing +56523at6656 Missing +56687at6656 Missing +56836at6656 Missing +57262at6656 Missing +57597at6656 Missing +57605at6656 Missing +57624at6656 Missing +57932at6656 Missing +58012at6656 Missing +58027at6656 Missing +58110at6656 Missing +58119at6656 Missing +58276at6656 Missing +59084at6656 Missing +59193at6656 Missing +59197at6656 Missing +59200at6656 Missing +59226at6656 Missing +59393at6656 Missing +59430at6656 Missing +59681at6656 Missing +59824at6656 Missing +59833at6656 Missing +60067at6656 Missing +60299at6656 Missing +60333at6656 Missing +60356at6656 Missing +60468at6656 Missing +60682at6656 Missing +60729at6656 Missing +60750at6656 Missing +60762at6656 Missing +61081at6656 Missing +61096at6656 Missing +61153at6656 Missing +61180at6656 Missing +61261at6656 Missing +61577at6656 Missing +61612at6656 Missing +62010at6656 Missing +62275at6656 Missing +62580at6656 Missing +62678at6656 Missing +62914at6656 Missing +62979at6656 Missing +63193at6656 Missing +63228at6656 Missing +63461at6656 Missing +63923at6656 Missing +63924at6656 Missing +64046at6656 Missing +64896at6656 Missing +65490at6656 Missing +65508at6656 Missing +65532at6656 Missing +65949at6656 Missing +66028at6656 Missing +66229at6656 Missing +66299at6656 Missing +66366at6656 Missing +66597at6656 Missing +66770at6656 Missing +67113at6656 Missing +67166at6656 Missing +67191at6656 Missing +67491at6656 Missing +67583at6656 Missing +67710at6656 Missing +68468at6656 Missing +68491at6656 Missing +68731at6656 Missing +68876at6656 Missing +68939at6656 Missing +68961at6656 Missing +68981at6656 Missing +68987at6656 Complete sample 40255 42070 + 122.8 266 https://www.orthodb.org/v10?query=68987at6656 mannose-1-phosphate guanyltransferase alpha +69201at6656 Missing +69238at6656 Missing +69284at6656 Missing +69394at6656 Missing +69403at6656 Missing +69742at6656 Missing +69897at6656 Missing +70078at6656 Missing +70201at6656 Missing +70300at6656 Missing +70550at6656 Missing +70663at6656 Missing +71018at6656 Missing +71110at6656 Missing +71129at6656 Missing +71199at6656 Missing +71230at6656 Missing +71251at6656 Missing +71483at6656 Missing +71937at6656 Missing +72450at6656 Missing +72578at6656 Missing +72583at6656 Missing +72586at6656 Missing +72782at6656 Missing +72857at6656 Missing +73084at6656 Missing +73301at6656 Missing +73455at6656 Missing +73456at6656 Missing +73547at6656 Missing +74030at6656 Missing +74384at6656 Missing +74655at6656 Missing +74692at6656 Missing +74836at6656 Missing +75692at6656 Missing +75704at6656 Missing +75764at6656 Missing +75982at6656 Missing +76308at6656 Missing +76342at6656 Missing +76573at6656 Missing +76745at6656 Missing +76812at6656 Missing +77197at6656 Missing +77688at6656 Missing +77770at6656 Missing +77883at6656 Missing +77976at6656 Missing +77987at6656 Missing +78110at6656 Missing +78202at6656 Missing +78254at6656 Missing +78695at6656 Missing +78758at6656 Missing +78777at6656 Missing +78844at6656 Missing +78854at6656 Missing +78919at6656 Missing +78921at6656 Missing +78947at6656 Missing +78968at6656 Missing +79241at6656 Missing +79377at6656 Missing +79915at6656 Missing +79993at6656 Missing +80067at6656 Missing +80294at6656 Missing +80317at6656 Missing +80348at6656 Missing +80689at6656 Missing +80693at6656 Missing +80948at6656 Missing +81292at6656 Missing +81307at6656 Missing +81406at6656 Missing +81413at6656 Missing +81423at6656 Missing +81650at6656 Missing +81703at6656 Missing +81708at6656 Missing +81919at6656 Missing +81950at6656 Missing +83102at6656 Missing +83164at6656 Missing +83303at6656 Missing +83350at6656 Missing +83372at6656 Missing +83376at6656 Missing +83613at6656 Missing +83673at6656 Missing +83755at6656 Missing +83765at6656 Missing +84028at6656 Missing +84097at6656 Missing +84149at6656 Missing +84169at6656 Missing +84422at6656 Missing +84576at6656 Missing +84819at6656 Missing +84925at6656 Missing +85103at6656 Missing +85509at6656 Missing +85574at6656 Missing +85680at6656 Missing +85810at6656 Missing +86262at6656 Missing +86318at6656 Missing +86488at6656 Missing +86654at6656 Missing +86715at6656 Missing +86889at6656 Missing +86930at6656 Missing +87014at6656 Missing +87089at6656 Missing +87103at6656 Missing +87114at6656 Missing +87139at6656 Missing +87142at6656 Missing +87527at6656 Missing +87575at6656 Missing +87695at6656 Missing +87728at6656 Missing +87910at6656 Missing +87928at6656 Missing +87933at6656 Missing +88051at6656 Missing +88711at6656 Missing +89064at6656 Missing +89153at6656 Missing +89677at6656 Missing +89713at6656 Missing +89810at6656 Missing +89840at6656 Missing +89864at6656 Missing +90126at6656 Missing +90322at6656 Missing +90580at6656 Missing +90600at6656 Missing +90822at6656 Missing +90928at6656 Missing +90931at6656 Missing +91002at6656 Missing +91005at6656 Missing +91022at6656 Missing +91313at6656 Missing +91418at6656 Missing +91468at6656 Missing +91933at6656 Missing +91946at6656 Missing +92167at6656 Missing +92184at6656 Missing +92420at6656 Missing +92576at6656 Missing +92777at6656 Missing +92854at6656 Missing +93061at6656 Missing +93085at6656 Missing +93152at6656 Missing +93168at6656 Missing +93408at6656 Missing +93432at6656 Missing +93483at6656 Missing +93507at6656 Missing +93535at6656 Missing +93797at6656 Missing +94054at6656 Missing +94238at6656 Complete sample 34845 35678 - 60.7 116 https://www.orthodb.org/v10?query=94238at6656 checkpoint protein HUS1 +94263at6656 Missing +94304at6656 Missing +94473at6656 Missing +94476at6656 Missing +94842at6656 Missing +94878at6656 Missing +95028at6656 Missing +95089at6656 Missing +95294at6656 Missing +95524at6656 Missing +96251at6656 Missing +96444at6656 Missing +96569at6656 Missing +96592at6656 Missing +96601at6656 Missing +96956at6656 Missing +96971at6656 Missing +97225at6656 Missing +97492at6656 Missing +97749at6656 Missing +97763at6656 Missing +97865at6656 Missing +98066at6656 Missing +98251at6656 Missing +98544at6656 Missing +98620at6656 Missing +98725at6656 Missing +98755at6656 Missing +98821at6656 Missing +98845at6656 Missing +98927at6656 Missing +98948at6656 Missing +99204at6656 Missing +99270at6656 Missing +99307at6656 Missing +99377at6656 Missing +99519at6656 Missing +99625at6656 Missing +99998at6656 Missing +100070at6656 Missing +100136at6656 Missing +100216at6656 Missing +100227at6656 Missing +100296at6656 Missing +100612at6656 Missing +100664at6656 Missing +100673at6656 Missing +100760at6656 Missing +101349at6656 Missing +101359at6656 Missing +101491at6656 Missing +101531at6656 Missing +101621at6656 Missing +101727at6656 Missing +101761at6656 Missing +101767at6656 Missing +101829at6656 Missing +101886at6656 Missing +102321at6656 Missing +102714at6656 Missing +102770at6656 Missing +103125at6656 Missing +103207at6656 Missing +103479at6656 Missing +103590at6656 Missing +103747at6656 Missing +103749at6656 Missing +103752at6656 Missing +103908at6656 Missing +103914at6656 Missing +104063at6656 Missing +104122at6656 Missing +104198at6656 Missing +104410at6656 Missing +104588at6656 Missing +104595at6656 Missing +104604at6656 Missing +104769at6656 Missing +104898at6656 Missing +105000at6656 Missing +105099at6656 Missing +105170at6656 Missing +105364at6656 Missing +105457at6656 Missing +105771at6656 Missing +105887at6656 Missing +106116at6656 Missing +106126at6656 Missing +106466at6656 Missing +106470at6656 Missing +106634at6656 Missing +106639at6656 Missing +106788at6656 Missing +106988at6656 Missing +107030at6656 Missing +107139at6656 Missing +107226at6656 Missing +107353at6656 Missing +107427at6656 Missing +107453at6656 Missing +107615at6656 Missing +107802at6656 Missing +107806at6656 Missing +107844at6656 Missing +108162at6656 Missing +108207at6656 Missing +108240at6656 Missing +108693at6656 Missing +108702at6656 Missing +108705at6656 Missing +108808at6656 Missing +109131at6656 Missing +109174at6656 Missing +109325at6656 Missing +109444at6656 Missing +109484at6656 Missing +109562at6656 Missing +109664at6656 Missing +109724at6656 Missing +109793at6656 Missing +109919at6656 Missing +109923at6656 Missing +110129at6656 Missing +110504at6656 Missing +110787at6656 Missing +110982at6656 Missing +111082at6656 Missing +111153at6656 Missing +111236at6656 Missing +111239at6656 Missing +111545at6656 Missing +111851at6656 Missing +112281at6656 Missing +112328at6656 Missing +112360at6656 Missing +112556at6656 Missing +112634at6656 Missing +112645at6656 Missing +112759at6656 Missing +113015at6656 Missing +113300at6656 Missing +113432at6656 Missing +113604at6656 Missing +113622at6656 Missing +113641at6656 Missing +113668at6656 Missing +113713at6656 Missing +113817at6656 Missing +113818at6656 Missing +113865at6656 Missing +113960at6656 Missing +114019at6656 Missing +114360at6656 Missing +114463at6656 Missing +114609at6656 Missing +114738at6656 Missing +114765at6656 Missing +115001at6656 Missing +115208at6656 Missing +115229at6656 Missing +115252at6656 Missing +115256at6656 Missing +115462at6656 Missing +115537at6656 Missing +115841at6656 Missing +115917at6656 Missing +115959at6656 Missing +115986at6656 Missing +116117at6656 Missing +116401at6656 Missing +116608at6656 Missing +116688at6656 Missing +116804at6656 Missing +116982at6656 Missing +117173at6656 Missing +117335at6656 Missing +117399at6656 Missing +117413at6656 Missing +117586at6656 Missing +117742at6656 Missing +117811at6656 Missing +117843at6656 Missing +117947at6656 Missing +118014at6656 Missing +118037at6656 Missing +118496at6656 Missing +118527at6656 Missing +118761at6656 Missing +118780at6656 Missing +118807at6656 Missing +118831at6656 Missing +118904at6656 Missing +119012at6656 Missing +119144at6656 Missing +119188at6656 Missing +119194at6656 Missing +119438at6656 Missing +119541at6656 Missing +119951at6656 Missing +120047at6656 Missing +120383at6656 Missing +120445at6656 Missing +120875at6656 Missing +120907at6656 Missing +120958at6656 Missing +121002at6656 Missing +121220at6656 Missing +121530at6656 Missing +121558at6656 Missing +121847at6656 Missing +121894at6656 Missing +122526at6656 Missing +122665at6656 Missing +122816at6656 Missing +123035at6656 Missing +123320at6656 Missing +123409at6656 Missing +123631at6656 Missing +123672at6656 Missing +123790at6656 Missing +123793at6656 Missing +123853at6656 Missing +124174at6656 Missing +124282at6656 Missing +124400at6656 Missing +124452at6656 Missing +124628at6656 Missing +124707at6656 Missing +124720at6656 Missing +124730at6656 Missing +124981at6656 Missing +125100at6656 Missing +125127at6656 Missing +125210at6656 Missing +125234at6656 Missing +125238at6656 Missing +125414at6656 Missing +125446at6656 Missing +125452at6656 Missing +125716at6656 Missing +126074at6656 Missing +126225at6656 Missing +126442at6656 Missing +126483at6656 Missing +126733at6656 Missing +127349at6656 Missing +127511at6656 Missing +127602at6656 Missing +127649at6656 Missing +127661at6656 Missing +127775at6656 Missing +127998at6656 Missing +128030at6656 Missing +128188at6656 Missing +128216at6656 Missing +128331at6656 Missing +128464at6656 Missing +128916at6656 Missing +129077at6656 Missing +129131at6656 Missing +129200at6656 Missing +129593at6656 Missing +129618at6656 Missing +129675at6656 Missing +129886at6656 Missing +129902at6656 Missing +129989at6656 Missing +130105at6656 Missing +130126at6656 Missing +130176at6656 Missing +130363at6656 Missing +130514at6656 Missing +130563at6656 Missing +130663at6656 Missing +130825at6656 Missing +130923at6656 Missing +131276at6656 Missing +131307at6656 Missing +131495at6656 Missing +131516at6656 Missing +131588at6656 Missing +131642at6656 Missing +131668at6656 Missing +131720at6656 Missing +131751at6656 Missing +131921at6656 Missing +132329at6656 Missing +132340at6656 Missing +132441at6656 Missing +132495at6656 Missing +132760at6656 Missing +132854at6656 Missing +132857at6656 Missing +133015at6656 Missing +133329at6656 Missing +133362at6656 Missing +133422at6656 Missing +133603at6656 Missing +133735at6656 Missing +133949at6656 Missing +134073at6656 Missing +134209at6656 Missing +134216at6656 Missing +134673at6656 Missing +134708at6656 Missing +134776at6656 Missing +134835at6656 Missing +134853at6656 Missing +134865at6656 Missing +134885at6656 Missing +135065at6656 Missing +135075at6656 Missing +135107at6656 Missing +135123at6656 Missing +135203at6656 Missing +135204at6656 Missing +135215at6656 Missing +135357at6656 Missing +135373at6656 Missing +135391at6656 Missing +135526at6656 Missing +135676at6656 Missing +135690at6656 Missing +135702at6656 Missing +135764at6656 Missing +135828at6656 Missing +135834at6656 Missing +135859at6656 Missing +135975at6656 Missing +135994at6656 Missing +136055at6656 Missing +136095at6656 Missing +136119at6656 Missing +136224at6656 Missing +136365at6656 Missing +136559at6656 Missing +136888at6656 Missing +137050at6656 Missing +137197at6656 Missing +137202at6656 Missing +137334at6656 Missing +137338at6656 Missing +137422at6656 Missing +137609at6656 Missing +137688at6656 Missing +137709at6656 Missing +137711at6656 Missing +138243at6656 Missing +138271at6656 Missing +138379at6656 Missing +138401at6656 Missing +138502at6656 Missing +138553at6656 Missing +138659at6656 Missing +138684at6656 Missing +138937at6656 Missing +139217at6656 Missing +139553at6656 Missing +139638at6656 Missing +139744at6656 Missing +139834at6656 Missing +140076at6656 Missing +140197at6656 Missing +140198at6656 Missing +140403at6656 Missing +140461at6656 Missing +140693at6656 Missing +140874at6656 Missing +140903at6656 Missing +141031at6656 Missing +141163at6656 Missing +141166at6656 Missing +141175at6656 Missing +141298at6656 Missing +141804at6656 Missing +141859at6656 Missing +141916at6656 Missing +142388at6656 Missing +142415at6656 Missing +142522at6656 Missing +142613at6656 Missing +142661at6656 Missing +142833at6656 Missing +143154at6656 Missing +143279at6656 Missing +143459at6656 Missing +143489at6656 Missing +143562at6656 Missing +143626at6656 Missing +143709at6656 Missing +143812at6656 Missing +143930at6656 Missing +144337at6656 Missing +144652at6656 Missing +144836at6656 Missing +144851at6656 Missing +144853at6656 Missing +145033at6656 Missing +145102at6656 Missing +145443at6656 Missing +145610at6656 Missing +145811at6656 Missing +145996at6656 Missing +146007at6656 Missing +146036at6656 Missing +146087at6656 Missing +146102at6656 Missing +146103at6656 Missing +146383at6656 Missing +146600at6656 Missing +146920at6656 Missing +147002at6656 Missing +147025at6656 Missing +147322at6656 Missing +147657at6656 Missing +147723at6656 Missing +147852at6656 Missing +147891at6656 Missing +147980at6656 Missing +148134at6656 Missing +148619at6656 Missing +148713at6656 Missing +148851at6656 Missing +148890at6656 Missing +149101at6656 Missing +149126at6656 Missing +149251at6656 Missing +149405at6656 Missing +149680at6656 Missing +149753at6656 Missing +149796at6656 Missing +149819at6656 Missing +149973at6656 Missing +149977at6656 Missing +150005at6656 Missing +150049at6656 Missing +150137at6656 Missing +150182at6656 Missing +150251at6656 Missing +150327at6656 Missing +150479at6656 Missing +150583at6656 Missing +150585at6656 Missing +150667at6656 Missing +150765at6656 Missing +151102at6656 Missing +151111at6656 Missing +151114at6656 Missing +151393at6656 Missing +151436at6656 Missing +151642at6656 Missing +151658at6656 Missing +152032at6656 Missing +152109at6656 Missing +152402at6656 Missing +152534at6656 Missing +152871at6656 Missing +153155at6656 Missing +153232at6656 Missing +153312at6656 Missing +153534at6656 Missing +153693at6656 Missing +153873at6656 Missing +154133at6656 Missing +154415at6656 Missing +154507at6656 Missing +155285at6656 Missing +156057at6656 Missing +156081at6656 Missing +156111at6656 Missing +156305at6656 Missing +156395at6656 Missing +156728at6656 Missing +156824at6656 Missing +156882at6656 Missing +156975at6656 Missing +157486at6656 Missing +157579at6656 Missing +157851at6656 Missing +157879at6656 Missing +158194at6656 Missing +158760at6656 Missing +159231at6656 Missing +159420at6656 Missing +159542at6656 Missing +160675at6656 Missing +160705at6656 Missing +161435at6656 Missing +162059at6656 Missing +162147at6656 Missing +162594at6656 Missing +162628at6656 Missing +162841at6656 Missing +163670at6656 Missing +163896at6656 Missing +164354at6656 Missing +164512at6656 Missing +165142at6656 Missing +165207at6656 Missing +165493at6656 Missing +166476at6656 Missing +166479at6656 Missing +166485at6656 Missing +169220at6656 Missing
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genome_results_metaeuk/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 @@ -0,0 +1,1014 @@ +# BUSCO version is: 5.0.0 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# Busco id +100070at6656 +100136at6656 +100216at6656 +100227at6656 +100296at6656 +100612at6656 +100664at6656 +100673at6656 +100760at6656 +101349at6656 +101359at6656 +101491at6656 +101531at6656 +101621at6656 +101727at6656 +101761at6656 +101767at6656 +101829at6656 +101886at6656 +102321at6656 +10240at6656 +102714at6656 +102770at6656 +103125at6656 +103207at6656 +103479at6656 +103590at6656 +103747at6656 +103749at6656 +103752at6656 +103908at6656 +103914at6656 +104063at6656 +104122at6656 +104198at6656 +104410at6656 +104588at6656 +104595at6656 +104604at6656 +104769at6656 +104898at6656 +105000at6656 +105099at6656 +105170at6656 +105364at6656 +105457at6656 +10573at6656 +105771at6656 +105887at6656 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genome_results_metaeuk/short_summary Mon Mar 15 21:27:17 2021 +0000 @@ -0,0 +1,15 @@ +# BUSCO version is: 5.0.0 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmp7tgu744e/files/3/e/e/dataset_3ee78f14-2ccd-4666-af87-075e725e09bd.dat +# BUSCO was run in mode: genome +# Gene predictor used: metaeuk + + ***** Results: ***** + + C:0.2%[S:0.2%,D:0.0%],F:0.0%,M:99.8%,n:1013 + 2 Complete BUSCOs (C) + 2 Complete and single-copy BUSCOs (S) + 0 Complete and duplicated BUSCOs (D) + 0 Fragmented BUSCOs (F) + 1011 Missing BUSCOs (M) + 1013 Total BUSCO groups searched
--- a/test-data/proteome_results/full_table Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/proteome_results/full_table Mon Mar 15 21:27:17 2021 +0000 @@ -1,4 +1,4 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id Status Sequence Score Length OrthoDB url Description 774at6656 Missing
--- a/test-data/proteome_results/missing_buscos_list Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/proteome_results/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 @@ -1,4 +1,4 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id 100070at6656
--- a/test-data/proteome_results/short_summary Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/proteome_results/short_summary Mon Mar 15 21:27:17 2021 +0000 @@ -1,6 +1,6 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/0/9/0/dataset_090e32f3-7f4a-47b2-b1c3-c80bb88da90f.dat +# Summarized benchmarking in BUSCO notation for file /tmp/tmp7tgu744e/files/8/e/0/dataset_8e0c0f40-2615-49a6-a2aa-9e5ad5f5a163.dat # BUSCO was run in mode: proteins ***** Results: *****
--- a/test-data/transcriptome_results/full_table Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/transcriptome_results/full_table Mon Mar 15 21:27:17 2021 +0000 @@ -1,4 +1,4 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id Status Sequence Score Length OrthoDB url Description 774at6656 Missing @@ -86,7 +86,7 @@ 22098at6656 Missing 22148at6656 Missing 22358at6656 Missing -22364at6656 Complete BUSCOaEOG7B0HST 1355.6 788 https://www.orthodb.org/v10?query=22364at6656 importin-5 +22364at6656 Complete BUSCOaEOG7B0HST:0-2699 1355.6 788 https://www.orthodb.org/v10?query=22364at6656 importin-5 22468at6656 Missing 22611at6656 Missing 22887at6656 Missing
--- a/test-data/transcriptome_results/missing_buscos_list Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/transcriptome_results/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 @@ -1,4 +1,4 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id 100070at6656
--- a/test-data/transcriptome_results/short_summary Wed Dec 30 14:07:37 2020 +0000 +++ b/test-data/transcriptome_results/short_summary Mon Mar 15 21:27:17 2021 +0000 @@ -1,6 +1,6 @@ -# BUSCO version is: 4.1.4 +# BUSCO version is: 5.0.0 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/c/d/5/dataset_cd590461-e7d2-4927-8b96-f3282e2da236.dat +# Summarized benchmarking in BUSCO notation for file /tmp/tmpn3gmbt1s/files/4/1/3/dataset_413f631e-7113-4502-9085-5f25549301e4.dat # BUSCO was run in mode: transcriptome ***** Results: *****