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changeset 8:602fb8e63aa7 draft

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"planemo upload commit 92185cd605fe0cfa78593ea10b0222e8aeb6ef98"
author iuc
date Wed, 30 Dec 2020 14:07:37 +0000
parents 4048d82f0c88
children cf13a1e03e5b
files busco.xml macros.xml test-data/genome_results/full_table test-data/genome_results/missing_buscos_list test-data/genome_results/short_summary test-data/proteome_results/full_table test-data/proteome_results/missing_buscos_list test-data/proteome_results/short_summary test-data/transcriptome_results/full_table test-data/transcriptome_results/missing_buscos_list test-data/transcriptome_results/short_summary
diffstat 11 files changed, 27 insertions(+), 23 deletions(-) [+]
line wrap: on
line diff
--- a/busco.xml	Mon Aug 17 06:50:18 2020 -0400
+++ b/busco.xml	Wed Dec 30 14:07:37 2020 +0000
@@ -82,7 +82,11 @@
             <param name="mode" value="geno"/>
             <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4"/>
             <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4"/>
-            <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4"/>
+            <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4">
+                <assert_contents>
+                    <has_text text="# BUSCO version is: @TOOL_VERSION@" />
+                </assert_contents>
+            </output>
         </test>
         <test>
             <param name="input" value="proteome.fa"/>
--- a/macros.xml	Mon Aug 17 06:50:18 2020 -0400
+++ b/macros.xml	Wed Dec 30 14:07:37 2020 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">4.1.2</token>
+    <token name="@TOOL_VERSION@">4.1.4</token>
 
     <xml name="citations">
         <citations>
--- a/test-data/genome_results/full_table	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/genome_results/full_table	Wed Dec 30 14:07:37 2020 +0000
@@ -1,5 +1,5 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
 # Busco id	Status	Sequence	Gene Start	Gene End	Score	Length	OrthoDB url	Description
 774at6656	Missing
 980at6656	Missing
--- a/test-data/genome_results/missing_buscos_list	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/genome_results/missing_buscos_list	Wed Dec 30 14:07:37 2020 +0000
@@ -1,5 +1,5 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
 # Busco id
 100070at6656
 100136at6656
--- a/test-data/genome_results/short_summary	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/genome_results/short_summary	Wed Dec 30 14:07:37 2020 +0000
@@ -1,6 +1,6 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
-# Summarized benchmarking in BUSCO notation for file /tmp/tmpsafr8yho/files/4/1/7/dataset_417da650-712e-4081-86f4-3edaae2d6232.dat
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
+# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/d/c/0/dataset_dc06dd53-8ed0-477c-b8bd-dd9fe68fd7e0.dat
 # BUSCO was run in mode: genome
 
 	***** Results: *****
--- a/test-data/proteome_results/full_table	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/proteome_results/full_table	Wed Dec 30 14:07:37 2020 +0000
@@ -1,5 +1,5 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
 # Busco id	Status	Sequence	Score	Length	OrthoDB url	Description
 774at6656	Missing
 980at6656	Missing
--- a/test-data/proteome_results/missing_buscos_list	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/proteome_results/missing_buscos_list	Wed Dec 30 14:07:37 2020 +0000
@@ -1,5 +1,5 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
 # Busco id
 100070at6656
 100136at6656
--- a/test-data/proteome_results/short_summary	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/proteome_results/short_summary	Wed Dec 30 14:07:37 2020 +0000
@@ -1,6 +1,6 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
-# Summarized benchmarking in BUSCO notation for file /tmp/tmpsafr8yho/files/5/e/9/dataset_5e95c1d5-37e1-4fca-8e9b-3058fa860695.dat
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
+# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/0/9/0/dataset_090e32f3-7f4a-47b2-b1c3-c80bb88da90f.dat
 # BUSCO was run in mode: proteins
 
 	***** Results: *****
--- a/test-data/transcriptome_results/full_table	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/transcriptome_results/full_table	Wed Dec 30 14:07:37 2020 +0000
@@ -1,5 +1,5 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
 # Busco id	Status	Sequence	Score	Length	OrthoDB url	Description
 774at6656	Missing
 980at6656	Missing
--- a/test-data/transcriptome_results/missing_buscos_list	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/transcriptome_results/missing_buscos_list	Wed Dec 30 14:07:37 2020 +0000
@@ -1,5 +1,5 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
 # Busco id
 100070at6656
 100136at6656
--- a/test-data/transcriptome_results/short_summary	Mon Aug 17 06:50:18 2020 -0400
+++ b/test-data/transcriptome_results/short_summary	Wed Dec 30 14:07:37 2020 +0000
@@ -1,6 +1,6 @@
-# BUSCO version is: 4.1.2 
-# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
-# Summarized benchmarking in BUSCO notation for file /tmp/tmpsafr8yho/files/9/9/2/dataset_9922e6bd-50c2-4b64-8e36-70b9b9c3f8ed.dat
+# BUSCO version is: 4.1.4 
+# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013)
+# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/c/d/5/dataset_cd590461-e7d2-4927-8b96-f3282e2da236.dat
 # BUSCO was run in mode: transcriptome
 
 	***** Results: *****