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comparison test-data/genome_results/short_summary @ 16:bb935709506a draft

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planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
author iuc
date Thu, 12 Jan 2023 13:28:58 +0000
parents 2dd755c1c6ff
children 2a5b8b9936bf
comparison
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15:41030a6c03b7 16:bb935709506a
1 # BUSCO version is: 5.2.1 1 # BUSCO version is: 5.4.4
2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) 2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013)
3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/9/e/c/dataset_9ec37448-e146-4536-b66f-9082e1734ea4.dat 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmprqvmp912/files/000/dataset_22.dat
4 # BUSCO was run in mode: genome 4 # BUSCO was run in mode: euk_genome_aug
5 # Gene predictor used: augustus 5 # Gene predictor used: augustus
6 6
7 ***** Results: ***** 7 ***** Results: *****
8 8
9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013 9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013
12 0 Complete and duplicated BUSCOs (D) 12 0 Complete and duplicated BUSCOs (D)
13 0 Fragmented BUSCOs (F) 13 0 Fragmented BUSCOs (F)
14 1012 Missing BUSCOs (M) 14 1012 Missing BUSCOs (M)
15 1013 Total BUSCO groups searched 15 1013 Total BUSCO groups searched
16 16
17 Assembly Statistics:
18 1 Number of scaffolds
19 1 Number of contigs
20 62370 Total length
21 0.000% Percent gaps
22 62 KB Scaffold N50
23 62 KB Contigs N50
24
25
17 Dependencies and versions: 26 Dependencies and versions:
18 hmmsearch: 3.1 27 hmmsearch: 3.1
19 makeblastdb: 2.12.0+ 28 bbtools: 39.01
20 tblastn: 2.12.0+ 29 makeblastdb: 2.13.0+
21 augustus: 3.4.0 30 tblastn: 2.13.0+
31 augustus: 3.5.0
22 gff2gbSmallDNA.pl: None 32 gff2gbSmallDNA.pl: None
23 new_species.pl: None 33 new_species.pl: None
24 etraining: None 34 etraining: None
35 busco: 5.4.4