Mercurial > repos > iuc > charts
view histogram.r @ 1:344ac3ca7557 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 4494db13b69987fbc97d47177d2a5956e46e927b"
author | iuc |
---|---|
date | Wed, 17 Nov 2021 09:06:59 +0000 |
parents | a87a3773d8ed |
children |
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# wrapper wrapper <- function(table, columns, options) { # initialize output list l <- list() # loop through all columns m <- list() for (key in names(columns)) { # load column data column <- as.numeric(columns[key]) column_data <- suppressWarnings(as.numeric(as.character(table[column][[1]]))) # collect vectors in list m <- append(m, list(column_data)) } # identify optimal breaks hist_data <- hist(unlist(m), plot = FALSE) breaks <- hist_data$breaks; # add as first column l <- append(l, list(breaks[2: length(breaks)])) # loop through all columns for (key in seq(m)) { # load column data column_data <- m[[key]] # create hist data hist_data <- hist(column_data, breaks = breaks, plot = FALSE) # normalize densities count_sum <- sum(hist_data$counts) if (count_sum > 0) { hist_data$counts <- hist_data$counts / count_sum } # collect vectors in list l <- append(l, list(hist_data$counts)) } # return return(l) }