Mercurial > repos > iuc > checkm_tetra

diff tetra.xml @ 0:878d742dacf0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
author: iuc
date: Fri, 29 Jul 2022 20:34:20 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tetra.xml	Fri Jul 29 20:34:20 2022 +0000
@@ -0,0 +1,50 @@
+<tool id="checkm_tetra" name="CheckM tetra" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>
+        Calculate tetranucleotide signature of sequences
+    </description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="biotools"/>
+    <expand macro="requirements"/>
+    <expand macro="version"/>
+    <command detect_errors="exit_code"><![CDATA[
+checkm tetra
+    '$seq_file'
+    '$tetra_profile'
+    --threads \${GALAXY_SLOTS:-1}
+    ]]></command>
+    <inputs>
+        <param name="seq_file" type="data" format="fasta" label="Sequences used to generate bins"/>
+    </inputs>
+    <outputs>
+        <data name="tetra_profile" format="tabular"/>
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <param name="seq_file" value="637000110.fna"/>
+            <output name="tetra_profile" ftype="tabular">
+                <assert_contents>
+                    <has_text text="AC_000091"/>
+                    <has_text text="Sequence Id"/>
+                    <has_text text="GGGA"/>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+    <help><![CDATA[
+@HELP_HEADER@
+
+This command generates taxonomic-specific marker set
+
+Inputs
+======
+
+
+Outputs
+=======
+
+
+    ]]></help>
+    <expand macro="citations"/>
+</tool>