Mercurial > repos > iuc > chewbbaca_joinprofiles
view macros.xml @ 3:e3cba867efd4 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8bb518e20d68623904232ae28bb8a51ec05c1c4a
author | iuc |
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date | Wed, 25 Sep 2024 14:13:56 +0000 |
parents | f16c5cfeab7d |
children |
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<macros> <token name="@CHEW_VERSION@">3.3.10</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">23.0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@CHEW_VERSION@">chewbbaca</requirement> <requirement type="package" version="2.15.0">blast</requirement> <requirement type="package" version="3.0">zip</requirement> <requirement type="package" version="2.1.11">fasttree</requirement> <yield/> </requirements> </xml> <xml name="citations"> <citations> <citation type="doi">10.1099/mgen.0.000166</citation> </citations> </xml> <xml name="species_id"> <option value="1">Streptococcus pyogenes</option> <option value="2">Acinetobacter baumannii</option> <option value="3">Arcobacter butzleri</option> <option value="4">Campylobacter jejuni</option> <option value="5">Escherichia coli</option> <option value="6">Listeria monocytogenes</option> <option value="7">Yersinia enterocolitica</option> <option value="8">Salmonella enterica</option> <option value="9">Streptococcus agalactiae</option> <option value="10">Brucella melitensis</option> <option value="11">Brucella</option> <option value="12">Clostridium perfringens</option> <option value="13">Clostridium chauvoei</option> <option value="14">Bacillus anthracis</option> <option value="15">Klebsiella oxytoca</option> <option value="16">Clostridium neonatale</option> </xml> <token name="@COMMON_INPUT@"> --bsr $blast_score_ratio --l $minimum_length --t $translation_table --st $size_threshold </token> <xml name="common_param"> <param argument="--blast_score-ratio" type="float" min="0.0" max="1.0" value="0.6" label="BLAST Score Ratio value" /> <param argument="--translation-table" type="integer" min="0" value="11" label="Genetic code used to predict genes and to translate coding sequences"/> <param argument="--size-threshold" type="float" min="0" value="0.2" label="CDS size variation threshold"/> </xml> </macros>