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comparison colours/cg.conf @ 2:014a21767ac4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 076837a2e9c2b6ececcea4aa286ea7a412387a96"
author iuc
date Tue, 17 Sep 2019 16:54:57 -0400
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1:ae9994cf526f 2:014a21767ac4
1 # RGB color definition. Colors are refered to within configuration files
2 # by their name. In order to use a color, you must define it here.
3 #
4 # e.g. if you really must use 'bisque', then add
5 #
6 # bisque = 255,228,196
7 #
8 # Many useful colors are already defined. In general, given a HUE, these
9 # colors are defined
10 #
11 # vlHUE (very light HUE, e.g. vlred)
12 # lHUE (light HUE, e.g. red)
13 # HUE (e.g. red)
14 # dHUE (dark HUE, e.g. dred)
15 #
16 # In addition to hues, two other color groups are defined.
17 #
18 # - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which
19 # correspond to colors on ideogram bands
20 # - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA)
21
22 optblue = 55,133,221
23 optgreen = 55,221,125
24 optyellow = 221,215,55
25 optorange = 221,164,55
26 optred = 221,55,55
27 optviolet = 145,55,221
28 optpurple = 219,55,221
29
30 white = 255,255,255
31 vvvvlgrey = 250,250,250
32 vvvlgrey = 240,240,240
33 vvlgrey = 230,230,230
34 vlgrey = 220,220,220
35 lgrey = 210,210,210
36 grey = 200,200,200
37 dgrey = 170,170,170
38 vdgrey = 140,140,140
39 vvdgrey = 100,100,100
40 vvvdgrey = 70,70,70
41 vvvvdgrey = 40,40,40
42 black = 0,0,0
43
44 vlred = 255,193,200
45 lred = 255,122,137
46 red = 247,42,66
47 dred = 205,51,69
48
49 vlgreen = 204,255,218
50 lgreen = 128,255,164
51 green = 51,204,94
52 dgreen = 38,153,71
53
54 vlblue = 128,176,255
55 lblue = 64,137,255
56 blue = 54,116,217
57 dblue = 38,82,153
58
59 vlpurple= 242,128,255
60 lpurple = 236,64,255
61 purple = 189,51,204
62 dpurple = 118,32,128
63
64 vlyellow = 255,253,202
65 lyellow = 255,252,150
66 yellow = 255,255,0
67 dyellow = 191,186,48
68
69 lime = 186,255,0
70
71 vlorange = 255,228,193
72 lorange = 255,187,110
73 orange = 255,136,0
74 dorange = 221,143,55
75
76 pink = 255,105,180
77
78 # CGI colors
79 # bluegray
80 cgi1 = 58,111,143
81 # orange
82 cgi2 = 240,142,79
83 # mediumgray
84 cgi3 = 92,112,124
85 # green
86 cgi4 = 71,170,66
87 # mustard
88 cgi5 = 193,202,92
89 # dullred
90 cgi6 = 217,83,30
91 # lightgray
92 cgi7 = 174,185,191
93 # darkturquoiseblue
94 cgi8 = 0,138,176
95 # purpleblue
96 cgi9 = 87,96,172
97
98 # functional colors
99 frameshift = 217,83,30
100 disrupt = 217,83,30
101 nonsense = 217,83,30
102 misstart = 217,83,30
103 nonstop = 87,96,172
104 missense = 87,96,172
105 insert = 87,96,172
106 delete = 87,96,172
107
108 # karyotype colors
109
110 gpos100 = 0,0,0
111 gpos = 0,0,0
112 gpos75 = 130,130,130
113 gpos66 = 160,160,160
114 gpos50 = 200,200,200
115 gpos33 = 210,210,210
116 gpos25 = 200,200,200
117 gvar = 220,220,220
118 gneg = 255,255,255
119 acen = 217,47,39
120 stalk = 100,127,164
121
122 # others
123
124 select = 135,177,255
125
126 # new york times cmyk-safe
127
128 # roygbiv - normal
129 nyt_blue = 104,152,178
130 nyt_green = 137,129,96
131 nyt_yellow = 241,221,117
132 nyt_orange = 230,146,57
133 nyt_red = 217,47,39
134
135 # chromosome color map (UCSC)
136
137 chr1 = 153,102,0
138 chr2 = 102,102,0
139 chr3 = 153,153,30
140 chr4 = 204,0,0
141 chr5 = 255,0,0
142 chr6 = 255,0,204
143 chr7 = 255,204,204
144 chr8 = 255,153,0
145 chr9 = 255,204,0
146 chr10 = 255,255,0
147 chr11 = 204,255,0
148 chr12 = 0,255,0
149 chr13 = 53,128,0
150 chr14 = 0,0,204
151 chr15 = 102,153,255
152 chr16 = 153,204,255
153 chr17 = 0,255,255
154 chr18 = 204,255,255
155 chr19 = 153,0,204
156 chr20 = 204,51,255
157 chr21 = 204,153,255
158 chr22 = 102,102,102
159 chr23 = 153,153,153
160 chrX = 153,153,153
161 chr24 = 204,204,204
162 chrY = 204,204,204
163 chrM = 204,204,153
164 chr0 = 204,204,153
165 chrUn = 121,204,61
166 chrNA = 255,255,255