--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/colours/cg.conf	Tue Sep 17 16:54:57 2019 -0400
@@ -0,0 +1,166 @@
+# RGB color definition. Colors are refered to within configuration files
+# by their name. In order to use a color, you must define it here. 
+# 
+# e.g. if you really must use 'bisque', then add
+#
+# bisque = 255,228,196
+#
+# Many useful colors are already defined. In general, given a HUE, these
+# colors are defined
+#
+# vlHUE (very light HUE, e.g. vlred)
+# lHUE  (light HUE, e.g. red)
+# HUE   (e.g. red)
+# dHUE  (dark HUE, e.g. dred)
+#
+# In addition to hues, two other color groups are defined. 
+#
+# - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which
+#   correspond to colors on ideogram bands
+# - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA)
+
+optblue   = 55,133,221
+optgreen  = 55,221,125
+optyellow = 221,215,55
+optorange = 221,164,55
+optred    = 221,55,55
+optviolet = 145,55,221
+optpurple = 219,55,221
+
+white     = 255,255,255
+vvvvlgrey = 250,250,250
+vvvlgrey  = 240,240,240
+vvlgrey   = 230,230,230
+vlgrey    = 220,220,220
+lgrey     = 210,210,210
+grey      = 200,200,200
+dgrey     = 170,170,170
+vdgrey    = 140,140,140
+vvdgrey   = 100,100,100
+vvvdgrey  = 70,70,70
+vvvvdgrey = 40,40,40
+black     = 0,0,0
+
+vlred   = 255,193,200
+lred    = 255,122,137
+red     = 247,42,66
+dred    = 205,51,69
+
+vlgreen = 204,255,218
+lgreen  = 128,255,164
+green   = 51,204,94
+dgreen  = 38,153,71
+
+vlblue  = 128,176,255
+lblue   = 64,137,255
+blue    = 54,116,217
+dblue   = 38,82,153
+
+vlpurple= 242,128,255
+lpurple = 236,64,255
+purple  = 189,51,204
+dpurple = 118,32,128
+
+vlyellow = 255,253,202
+lyellow  = 255,252,150
+yellow   = 255,255,0
+dyellow  = 191,186,48
+
+lime     = 186,255,0
+
+vlorange = 255,228,193
+lorange  = 255,187,110
+orange   = 255,136,0
+dorange  = 221,143,55
+
+pink     = 255,105,180
+
+# CGI colors
+# bluegray
+cgi1        = 58,111,143
+# orange
+cgi2	    = 240,142,79
+# mediumgray
+cgi3        = 92,112,124
+# green
+cgi4        = 71,170,66
+# mustard
+cgi5        = 193,202,92
+# dullred
+cgi6        = 217,83,30
+# lightgray
+cgi7        = 174,185,191
+# darkturquoiseblue
+cgi8        = 0,138,176
+# purpleblue
+cgi9        = 87,96,172
+
+# functional colors
+frameshift  = 217,83,30
+disrupt     = 217,83,30
+nonsense    = 217,83,30
+misstart    = 217,83,30
+nonstop     = 87,96,172
+missense    = 87,96,172
+insert      = 87,96,172
+delete      = 87,96,172
+
+# karyotype colors
+
+gpos100 = 0,0,0
+gpos    = 0,0,0
+gpos75  = 130,130,130
+gpos66  = 160,160,160
+gpos50  = 200,200,200
+gpos33  = 210,210,210
+gpos25  = 200,200,200
+gvar    = 220,220,220
+gneg    = 255,255,255
+acen    = 217,47,39
+stalk   = 100,127,164
+
+# others
+
+select = 135,177,255
+
+# new york times cmyk-safe
+
+# roygbiv - normal
+nyt_blue   = 104,152,178
+nyt_green  = 137,129,96
+nyt_yellow = 241,221,117
+nyt_orange = 230,146,57
+nyt_red    = 217,47,39
+
+# chromosome color map (UCSC) 
+
+chr1 = 153,102,0
+chr2 = 102,102,0
+chr3 = 153,153,30
+chr4 = 204,0,0
+chr5 = 255,0,0
+chr6 = 255,0,204
+chr7 = 255,204,204
+chr8 = 255,153,0
+chr9 = 255,204,0
+chr10 = 255,255,0
+chr11 = 204,255,0
+chr12 = 0,255,0
+chr13 = 53,128,0
+chr14 = 0,0,204
+chr15 = 102,153,255
+chr16 = 153,204,255
+chr17 = 0,255,255
+chr18 = 204,255,255
+chr19 = 153,0,204
+chr20 = 204,51,255
+chr21 = 204,153,255
+chr22 = 102,102,102
+chr23 = 153,153,153
+chrX  = 153,153,153
+chr24 = 204,204,204
+chrY = 204,204,204
+chrM = 204,204,153
+chr0 = 204,204,153
+chrUn = 121,204,61
+chrNA = 255,255,255