Mercurial > repos > iuc > circos
view karyotype-from-fasta.py @ 8:e6cbe3190642 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit cc96dd4a8aef7d0b6d3057024af0344ab8a9410f"
author | iuc |
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date | Fri, 12 Jun 2020 10:39:58 -0400 |
parents | 4b519282a05b |
children |
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#!/usr/bin/env python import sys from Bio import SeqIO # Process fasta data, extracting only headers for idx, seq in enumerate(SeqIO.parse(sys.argv[1], "fasta")): sys.stdout.write( "chr - {seq_id} {seq_id} 0 {length} chr{idx}color\n".format( seq_id=seq.id, idx=idx, length=len(seq) ) )