Mercurial > repos > iuc > collection_column_join

comparison collection_column_join.xml @ 4:071084070619 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 11d99b82e4e78f3077bc5f6997403b602b8a8423
author iuc
date Thu, 28 Feb 2019 05:04:03 -0500
parents 58228a4d58fe
children 3ddd99c7efee
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3:58228a4d58fe 4:071084070619
54 </configfile> 54 </configfile>
55 </configfiles> 55 </configfiles>
56 <inputs> 56 <inputs>
57 <param name="input_tabular" type="data" format="tabular" multiple="True" optional="False" label="Tabular files"/> 57 <param name="input_tabular" type="data" format="tabular" multiple="True" optional="False" label="Tabular files"/>
58 <!-- <param name="identifier_column" type="data_column" data_ref="input_tabular" value="0" min="0" optional="False" label="Identifier column"/> --> 58 <!-- <param name="identifier_column" type="data_column" data_ref="input_tabular" value="0" min="0" optional="False" label="Identifier column"/> -->
59 <param name="identifier_column" type="integer" value="1" min="0" optional="False" label="Identifier column"/> 59 <param name="identifier_column" type="integer" value="1" min="0" optional="False" label="Identifier column" help="The column that will be used to join the input datasets"/>
60 <param name="has_header" type="integer" value="0" min="0" optional="False" label="Number of Header lines in each item"/> 60 <param name="has_header" type="integer" value="0" min="0" optional="False" label="Number of header lines in each input file" help="If this is set to 0, a header line will be added containing column names as follows: the identifier column will be named #KEY and the other columns are named by the input dataset names/columns. If you have one or more header lines in your input, set this to the number of header lines."/>
61 <param name="old_col_in_header" type="boolean" checked="true" label="Keep original column header" help="Disable if you want columns headers to be only composed of the input dataset names"/> 61 <param name="old_col_in_header" type="boolean" checked="true" label="Add column name to header" help="Disable if you want column headers to only be composed of the input file names, for example, if you want headers like file1 and not file1_column1, see Help section below. Default: Yes"/>
62 <param name="fill_char" type="text" value="." optional="False" label="Fill character"/> 62 <param name="fill_char" type="text" value="." optional="False" label="Fill character"/>
63 <param name="include_outputs" type="select" multiple="True" label="Additional datasets to create"> 63 <param name="include_outputs" type="select" multiple="True" label="Additional datasets to create">
64 <option value="output_shell_script" selected="false">Shell script</option> 64 <option value="output_shell_script" selected="false">Shell script</option>
65 </param> 65 </param>
66 </inputs> 66 </inputs>
116 116
117 **Example** 117 **Example**
118 118
119 To join three files, with headers, based on the first column: 119 To join three files, with headers, based on the first column:
120 120
121 **First file (in_1.tabular)**:: 121 **First file (in_1)**::
122 122
123 #KEY c2 c3 c4 123 #KEY c2 c3 c4
124 one 1-1 1-2 1-3 124 one 1-1 1-2 1-3
125 two 1-4 1-5 1-6 125 two 1-4 1-5 1-6
126 three 1-7 1-8 1-9 126 three 1-7 1-8 1-9
127 127
128 128
129 **Second File (in_2.tabular)**:: 129 **Second File (in_2)**::
130 130
131 #KEY c2 c3 c4 131 #KEY c2 c3 c4
132 one 2-1 2-2 2-3 132 one 2-1 2-2 2-3
133 two 2-4 2-5 2-6 133 two 2-4 2-5 2-6
134 three 2-7 2-8 2-9 134 three 2-7 2-8 2-9
135 135
136 **Third file (in_3.tabular)**:: 136 **Third file (in_3)**::
137 137
138 #KEY c2 c3 c4 138 #KEY c2 c3 c4
139 one 3-3 3-2 3-3 139 one 3-3 3-2 3-3
140 two 3-4 3-5 3-6 140 two 3-4 3-5 3-6
141 three 3-7 3-8 3-9 141 three 3-7 3-8 3-9
142 142
143 143
144 **Joining** the files, using **identifier column of 1** and a **header lines of 1**, will return:: 144 **Joining** the files, using **identifier column of 1** and a **header lines of 1**, will return::
145 145
146 #KEY in_1.tabular_c2 in_1.tabular_c3 in_1.tabular_c4 in_2.tabular_c2 in_2.tabular_c3 in_2.tabular_c4 in_3.tabular_c2 in_3.tabular_c3 in_3.tabular_c4 146 #KEY in_1_c2 in_1_c3 in_1_c4 in_2_c2 in_2_c3 in_2_c4 in_3_c2 in_3_c3 in_3_c4
147 one 1-1 1-2 1-3 2-1 2-2 2-3 3-3 3-2 3-3 147 one 1-1 1-2 1-3 2-1 2-2 2-3 3-3 3-2 3-3
148 three 1-7 1-8 1-9 2-7 2-8 2-9 3-7 3-8 3-9 148 three 1-7 1-8 1-9 2-7 2-8 2-9 3-7 3-8 3-9
149 two 1-4 1-5 1-6 2-4 2-5 2-6 3-4 3-5 3-6 149 two 1-4 1-5 1-6 2-4 2-5 2-6 3-4 3-5 3-6
150 150
151 151
152 **Joining** the files, using **identifier column of 1** and a **header lines of 1**, but disabling **Keep original column header**, will return:: 152 **Joining** the files, using **identifier column of 1** and a **header lines of 1**, but disabling **Add column name to header**, will return::
153 153
154 #KEY in_1.tabular in_1.tabular in_1.tabular in_2.tabular in_2.tabular in_2.tabular in_3.tabular in_3.tabular in_3.tabular 154 #KEY in_1 in_1 in_1 in_2 in_2 in_2 in_3 in_3 in_3
155 one 1-1 1-2 1-3 2-1 2-2 2-3 3-3 3-2 3-3 155 one 1-1 1-2 1-3 2-1 2-2 2-3 3-3 3-2 3-3
156 three 1-7 1-8 1-9 2-7 2-8 2-9 3-7 3-8 3-9 156 three 1-7 1-8 1-9 2-7 2-8 2-9 3-7 3-8 3-9
157 two 1-4 1-5 1-6 2-4 2-5 2-6 3-4 3-5 3-6 157 two 1-4 1-5 1-6 2-4 2-5 2-6 3-4 3-5 3-6
158 158
159 ]]> 159 ]]>