Mercurial > repos > iuc > collection_column_join

changeset 4:071084070619 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 11d99b82e4e78f3077bc5f6997403b602b8a8423
author iuc
date Thu, 28 Feb 2019 05:04:03 -0500
parents 58228a4d58fe
children 3ddd99c7efee
files collection_column_join.xml
diffstat 1 files changed, 9 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/collection_column_join.xml	Fri Apr 06 03:44:21 2018 -0400
+++ b/collection_column_join.xml	Thu Feb 28 05:04:03 2019 -0500
@@ -56,9 +56,9 @@
     <inputs>
         <param name="input_tabular" type="data" format="tabular" multiple="True" optional="False" label="Tabular files"/>
         <!-- <param name="identifier_column" type="data_column" data_ref="input_tabular" value="0" min="0" optional="False" label="Identifier column"/> -->
-        <param name="identifier_column" type="integer" value="1" min="0" optional="False" label="Identifier column"/>
-        <param name="has_header" type="integer" value="0" min="0" optional="False" label="Number of Header lines in each item"/>
-        <param name="old_col_in_header" type="boolean" checked="true" label="Keep original column header" help="Disable if you want columns headers to be only composed of the input dataset names"/>
+        <param name="identifier_column" type="integer" value="1" min="0" optional="False" label="Identifier column" help="The column that will be used to join the input datasets"/>
+        <param name="has_header" type="integer" value="0" min="0" optional="False" label="Number of header lines in each input file" help="If this is set to 0, a header line will be added containing column names as follows: the identifier column will be named #KEY and the other columns are named by the input dataset names/columns. If you have one or more header lines in your input, set this to the number of header lines."/>
+        <param name="old_col_in_header" type="boolean" checked="true" label="Add column name to header" help="Disable if you want column headers to only be composed of the input file names, for example, if you want headers like file1 and not file1_column1, see Help section below. Default: Yes"/>
         <param name="fill_char" type="text" value="." optional="False" label="Fill character"/>
         <param name="include_outputs" type="select" multiple="True" label="Additional datasets to create">
             <option value="output_shell_script" selected="false">Shell script</option>
@@ -118,7 +118,7 @@
 
 To join three files, with headers, based on the first column:
 
-**First file (in_1.tabular)**::
+**First file (in_1)**::
 
     #KEY    c2  c3  c4
     one     1-1 1-2 1-3
@@ -126,14 +126,14 @@
     three   1-7 1-8 1-9
 
 
-**Second File (in_2.tabular)**::
+**Second File (in_2)**::
 
     #KEY    c2  c3  c4
     one     2-1 2-2 2-3
     two     2-4 2-5 2-6
     three   2-7 2-8 2-9
 
-**Third file (in_3.tabular)**::
+**Third file (in_3)**::
 
     #KEY    c2  c3  c4
     one     3-3 3-2 3-3
@@ -143,15 +143,15 @@
 
 **Joining** the files, using **identifier column of 1** and a **header lines of 1**, will return::
 
-    #KEY    in_1.tabular_c2 in_1.tabular_c3 in_1.tabular_c4 in_2.tabular_c2 in_2.tabular_c3 in_2.tabular_c4 in_3.tabular_c2 in_3.tabular_c3 in_3.tabular_c4
+    #KEY    in_1_c2 in_1_c3 in_1_c4 in_2_c2 in_2_c3 in_2_c4 in_3_c2 in_3_c3 in_3_c4
     one     1-1              1-2            1-3             2-1              2-2             2-3             3-3             3-2             3-3
     three   1-7              1-8            1-9             2-7              2-8             2-9             3-7             3-8             3-9
     two     1-4              1-5            1-6             2-4              2-5             2-6             3-4             3-5             3-6
 
 
-**Joining** the files, using **identifier column of 1** and a **header lines of 1**, but disabling **Keep original column header**, will return::
+**Joining** the files, using **identifier column of 1** and a **header lines of 1**, but disabling **Add column name to header**, will return::
 
-    #KEY    in_1.tabular in_1.tabular in_1.tabular in_2.tabular in_2.tabular in_2.tabular in_3.tabular in_3.tabular in_3.tabular
+    #KEY    in_1 in_1 in_1 in_2 in_2 in_2 in_3 in_3 in_3
     one     1-1              1-2            1-3             2-1              2-2             2-3             3-3             3-2             3-3
     three   1-7              1-8            1-9             2-7              2-8             2-9             3-7             3-8             3-9
     two     1-4              1-5            1-6             2-4              2-5             2-6             3-4             3-5             3-6