Mercurial > repos > iuc > collection_element_identifiers

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author iuc
date Mon, 01 Apr 2019 12:06:57 -0400
parents 220ee3518f19
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d3c07d270a50 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 499e43875e82f64ed046fb85ee6f8ae7e5f3673f
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1 <tool id="collection_element_identifiers" name="Extract element identifiers" version="0.0.2">
0
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2 <description>of a list collection</description>
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3 <requirements>
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4 </requirements>
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5 <command detect_errors="exit_code"><![CDATA[
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6 mv '$cf' '$output'
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7 ]]>
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8 </command>
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9 <configfiles>
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10 <configfile name="cf">#for $el in $input_collection:
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11 ${el.element_identifier}
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12 #end for</configfile>
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13 </configfiles>
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14 <inputs>
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15 <param name="input_collection" type="data_collection" collection_type="list,list:paired" label="Dataset collection"/>
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16 </inputs>
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17 <outputs>
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18 <data name="output" format="txt" />
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="input_collection">
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23 <collection type="list">
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24 <element name="e1" value="simple_line.txt" />
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25 <element name="e2" value="simple_line.txt" />
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26 <element name="e3" value="simple_line.txt" />
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27 </collection>
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28 </param>
1
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29 <output name="output" file="output_1.txt" />
d3c07d270a50 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 499e43875e82f64ed046fb85ee6f8ae7e5f3673f
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30 </test>
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31 <test>
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32 <param name="input_collection">
d3c07d270a50 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 499e43875e82f64ed046fb85ee6f8ae7e5f3673f
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33 <collection type="list:paired">
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34 <element name="pair1">
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35 <collection type="paired">
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36 <element name="forward" value="simple_line.txt" />
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37 <element name="reverse" value="simple_line.txt" />
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38 </collection>
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39 </element>
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40 <element name="pair2">
d3c07d270a50 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 499e43875e82f64ed046fb85ee6f8ae7e5f3673f
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41 <collection type="paired">
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42 <element name="forward" value="simple_line.txt" />
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43 <element name="reverse" value="simple_line.txt" />
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44 </collection>
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45 </element>
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46 </collection>
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47 </param>
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48 <output name="output" file="output_2.txt"/>
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49 </test>
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50 </tests>
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51 <help><![CDATA[
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52 This tool takes a list-type collection and produces a text dataset as output, containing the element identifiers of all datasets contained in the collection.
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53 ]]></help>
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54 <citations>
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55 </citations>
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56 </tool>