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comparison test-data/omicron_ba1_mutations.yaml @ 0:4be399803856 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
author iuc
date Thu, 11 Aug 2022 13:50:09 +0000
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-1:000000000000 0:4be399803856
1 variant:
2 voc: VOC-21NOV-01
3 pheuid: pentagon-refining
4 short: om1
5 pangolin: BA.1
6 source:
7 - https://github.com/cov-lineages/pango-designation/issues/343
8 threshold: 10
9 mut:
10 # ORF1ab
11 2832: 'A>G' # nsp3:K38R
12 5386: 'T>G' # syn nsp3
13 8393: 'G>A' # nsp3:A1892T
14 11537: 'A>G' # nsp6:I189V
15 13195: 'T>C' # syn nsp10
16 18163: 'A>G' # nsp14:I42V
17 # S
18 22679: 'T>C' # surface glycoprotein:S373P
19 22898: 'G>A' # surface glycoprotein:G446S
20 23048: 'G>A' # surface glycoprotein:G496S
21 23202: 'C>A' # surface glycoprotein:T547K
22 23599: 'T>G' # surface glycoprotein:N679K
23 24130: 'C>A' # surface glycoprotein:N856K
24 24469: 'T>A' # surface glycoprotein:N969K
25 24503: 'C>T' # surface glycoprotein:L981F
26 # M
27 26530: 'A>G' # membrane glycoprotein:D3G
28 26577: 'C>G' # membrane glycoprotein:Q19E
29 # ORF6
30 27259: 'A>C' # syn ORF6 protein