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diff test-data/omicron_ba1_mutations.yaml @ 0:4be399803856 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
author iuc
date Thu, 11 Aug 2022 13:50:09 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/omicron_ba1_mutations.yaml	Thu Aug 11 13:50:09 2022 +0000
@@ -0,0 +1,30 @@
+variant:
+  voc: VOC-21NOV-01
+  pheuid: pentagon-refining
+  short: om1
+  pangolin: BA.1
+source:
+- https://github.com/cov-lineages/pango-designation/issues/343
+threshold: 10
+mut:
+  # ORF1ab
+  2832: 'A>G' # nsp3:K38R
+  5386: 'T>G' # syn nsp3
+  8393: 'G>A' # nsp3:A1892T
+  11537: 'A>G' # nsp6:I189V
+  13195: 'T>C' # syn nsp10
+  18163: 'A>G' # nsp14:I42V
+  # S
+  22679: 'T>C' # surface glycoprotein:S373P
+  22898: 'G>A' # surface glycoprotein:G446S
+  23048: 'G>A' # surface glycoprotein:G496S
+  23202: 'C>A' # surface glycoprotein:T547K
+  23599: 'T>G' # surface glycoprotein:N679K
+  24130: 'C>A' # surface glycoprotein:N856K
+  24469: 'T>A' # surface glycoprotein:N969K
+  24503: 'C>T' # surface glycoprotein:L981F
+  # M
+  26530: 'A>G' # membrane glycoprotein:D3G
+  26577: 'C>G' # membrane glycoprotein:Q19E
+  # ORF6
+  27259: 'A>C' # syn ORF6 protein