Mercurial > repos > iuc > crossmap_gff

changeset 8:45c57bf42470 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 39a5f30a013c6d71ea84807b72511e3aa4bab147
author iuc
date Fri, 20 Oct 2017 11:33:52 -0400
parents 1b57bf1bb4ec
children 040eed862c91
files crossmap_gff.xml macros.xml test-data/cached_locally/liftOver.loc
diffstat 3 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/crossmap_gff.xml	Fri Oct 20 02:48:09 2017 -0400
+++ b/crossmap_gff.xml	Fri Oct 20 11:33:52 2017 -0400
@@ -49,7 +49,7 @@
             <output name="output" file="test_gff_01_output_a__all.gtf"/>
         </test>
         <test><!-- cached chain file -->
-            <param name="input" value="test_gff_01_input_a.gtf" ftype="gtf"/>
+            <param name="input" value="test_gff_01_input_a.gtf" ftype="gtf" dbkey="hg18"/>
             <param name="index_source" value="cached"/>
             <param name="include_fails" value="True"/>
 
--- a/macros.xml	Fri Oct 20 02:48:09 2017 -0400
+++ b/macros.xml	Fri Oct 20 11:33:52 2017 -0400
@@ -28,9 +28,7 @@
             <when value="cached">
                 <param name="input_chain" type="select" label="Lift Over To">
                     <options from_data_table="liftOver">
-                        <!--
                         <filter type="data_meta" ref="input" key="dbkey" column="0"/>
-                        -->
                     </options>
                 </param>
             </when>
--- a/test-data/cached_locally/liftOver.loc	Fri Oct 20 02:48:09 2017 -0400
+++ b/test-data/cached_locally/liftOver.loc	Fri Oct 20 11:33:52 2017 -0400
@@ -29,4 +29,4 @@
 #anoCar1	hg18	/depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain
 #...etc...
 
-A	B	${__HERE__}/aToB.over.chain
+hg18	hg19	${__HERE__}/aToB.over.chain