Mercurial > repos > iuc > crossmap_gff

changeset 5:567ddd432541 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447-dirty
author iuc
date Tue, 26 Sep 2017 06:04:35 -0400
parents b18ce8713041
children 9ca13f08f2f7
files macros.xml tool_data_table_conf.xml.sample
diffstat 2 files changed, 8 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Sep 26 06:03:11 2017 -0400
+++ b/macros.xml	Tue Sep 26 06:04:35 2017 -0400
@@ -26,7 +26,12 @@
             </param>
             <when value="cached">
                 <param name="input_chain" type="select" label="Lift Over To">
-                    <options from_data_table="liftOver" />
+                    <options from_file="liftOver.loc">
+                        <column name="dbkey" index="0"/><!-- species/build 'from' -->
+                        <column name="name" index="1"/><!-- species/build 'to' -->
+                        <column name="value" index="2"/><!-- path of chain file -->
+                        <filter type="data_meta" ref="input" key="dbkey"/>
+                    </options>
                 </param>
             </when>
             <when value="history">
--- a/tool_data_table_conf.xml.sample	Tue Sep 26 06:03:11 2017 -0400
+++ b/tool_data_table_conf.xml.sample	Tue Sep 26 06:04:35 2017 -0400
@@ -1,10 +1,10 @@
 <tables>
-    
+    <!-- Locations of all fasta files under genome directory -->
     <table name="all_fasta" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/all_fasta.loc" />
     </table>
-    
+    <!-- Locations of all liftOver files -->
     <table name="liftOver" comment_char="#">
          <columns>dbkey, name, value</columns>
         <file path="tool-data/liftOver.loc" />