Mercurial > repos > iuc > crossmap_vcf
changeset 9:18f7e96459d2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit e10d34b547557b2bd4f0be69e31204bd5703e422"
| author | iuc |
|---|---|
| date | Thu, 20 Jan 2022 04:32:23 +0000 |
| parents | 6e96c77f5824 |
| children | d4965adac10c |
| files | macros.xml test-data/test_bam_01_output_a.bam test-data/test_bed_02_input_a.bed test-data/test_bed_02_output_a__all.bed test-data/test_bed_02_output_a__only_fails.bed test-data/test_vcf_01_input.vcf test-data/test_vcf_01_output.vcf.unmap |
| diffstat | 7 files changed, 18 insertions(+), 16 deletions(-) [+] |
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--- a/macros.xml Tue Nov 16 19:16:46 2021 +0000 +++ b/macros.xml Thu Jan 20 04:32:23 2022 +0000 @@ -6,7 +6,7 @@ <yield/> </requirements> </xml> - <token name="@TOOL_VERSION@">0.5.2</token> + <token name="@TOOL_VERSION@">0.6.1</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="stdio"> <stdio>
--- a/test-data/test_bed_02_input_a.bed Tue Nov 16 19:16:46 2021 +0000 +++ b/test-data/test_bed_02_input_a.bed Thu Jan 20 04:32:23 2022 +0000 @@ -1,5 +1,5 @@ -chr1 100 10000 -chr2 100 10000 -chr3 100 10000 -chr4 8941700 8947200 -chr5 1 100000000 \ No newline at end of file +1 100 10000 +2 100 10000 +3 100 10000 +4 8941700 8947200 +5 1 100000000
--- a/test-data/test_bed_02_output_a__all.bed Tue Nov 16 19:16:46 2021 +0000 +++ b/test-data/test_bed_02_output_a__all.bed Thu Jan 20 04:32:23 2022 +0000 @@ -1,5 +1,5 @@ -chr1 100 10000 Unmap -chr2 100 10000 Unmap -chr3 100 10000 Unmap -chr4 8941700 8947200 Unmap -chr5 1 100000000 Unmap +1 100 10000 Unmap +2 100 10000 Unmap +3 100 10000 Unmap +4 8941700 8947200 Unmap +5 1 100000000 Unmap
--- a/test-data/test_bed_02_output_a__only_fails.bed Tue Nov 16 19:16:46 2021 +0000 +++ b/test-data/test_bed_02_output_a__only_fails.bed Thu Jan 20 04:32:23 2022 +0000 @@ -1,5 +1,5 @@ -chr1 100 10000 Unmap -chr2 100 10000 Unmap -chr3 100 10000 Unmap -chr4 8941700 8947200 Unmap -chr5 1 100000000 Unmap +1 100 10000 Unmap +2 100 10000 Unmap +3 100 10000 Unmap +4 8941700 8947200 Unmap +5 1 100000000 Unmap
--- a/test-data/test_vcf_01_input.vcf Tue Nov 16 19:16:46 2021 +0000 +++ b/test-data/test_vcf_01_input.vcf Thu Jan 20 04:32:23 2022 +0000 @@ -2,6 +2,7 @@ ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype"> ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities"> ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods"> +##contig=<ID=1,length=195471971> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002 1 10 rs11449 G A . PASS . GT 0/0 0/1 1 100 rs84825 C C . PASS . GT:GP 0/1:. 0/1:0.03,0.97,0
--- a/test-data/test_vcf_01_output.vcf.unmap Tue Nov 16 19:16:46 2021 +0000 +++ b/test-data/test_vcf_01_output.vcf.unmap Thu Jan 20 04:32:23 2022 +0000 @@ -2,5 +2,6 @@ ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype"> ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities"> ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods"> +##contig=<ID=1,length=195471971> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002 1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0 Fail(REF==ALT)