Mercurial > repos > iuc > customize_metaphlan_database

annotate test-data/test_database_versioned.loc.test @ 11:a755466eb47c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
author iuc
date Mon, 29 Jul 2024 07:14:38 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
1 # Tab separated with 5 columns:
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
4 # - dbkey
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
5 # - path (folder name containing the Kraken DB)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
6 # - db version (whether it is SGB of Metaphlan v4 or not)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
7 test-db-20210409 "Test Database" test-db ${__HERE__}/test-db SGB
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
8 # the TOY DB should be called in tests with the hidden test parameter enables this will make Metaphlan
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
9 # download the data to the JWD
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
10 mpa_vJan21_TOY_CHOCOPhlAnSGB mpa_vJan21_TOY_CHOCOPhlAnSGB mpa_vJan21_TOY_CHOCOPhlAnSGB_202103 ./ SGB
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
11 # mpa_vJun23_CHOCOPhlAnSGB_202403 mpa_vJun23_CHOCOPhlAnSGB_202403 mpa_vJun23_CHOCOPhlAnSGB_202403 ${__HERE__}/mpa_vJun23_CHOCOPhlAnSGB_202403/ SGB